CK934371

Overview
NameCK934371
Unique NameCK934371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:409..1350. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.734e-27
Identity = 102/286 (35.66%), Postives = 139/286 (48.60%), Query Frame = 2
Query:   65 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--------STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 823
            MAT A+  S+     ++  S E  R++    G RI+   T K        STP  +  G +R  +    S+Q+ SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct:    1 MATQALISSS-----SISTSAEAARQI---IGSRISQSVTRKASFVVRAASTPP-VKQGANRQLWFA--SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.734e-27
Identity = 84/223 (37.67%), Postives = 112/223 (50.22%), Query Frame = 2
Query:  161 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKGKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 823
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK KE+KNGRLAM +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.366e-25
Identity = 65/117 (55.56%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  515 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA-WAYATNFVP 853
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELK KE+KNGRLAM  M GF+ QAIVTG+GP+EN   H+ DP A+N   A  T F P
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.518e-22
Identity = 72/189 (38.10%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  257 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 820
            +P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+ +K G+      W+ AG  Q F+     ++    L H   I   W   +   G V    I                 F+PL  A  P Q  E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQ--EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.099e-19
Identity = 60/190 (31.58%), Postives = 89/190 (46.84%), Query Frame = 2
Query:  254 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 823
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +                    L +    + +    E +R                  FDPL L  D  + A     E+KNGRLA+ ++ G   Q + TG+ P+ NL  H+A+P+  N
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPGFDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGAN 354          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.099e-19
Identity = 78/241 (32.37%), Postives = 104/241 (43.15%), Query Frame = 2
Query:  221 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 814
            DRP +      ++P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  GV      W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L+  E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:   51 DRPLWFP--GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.675e-19
Identity = 80/242 (33.06%), Postives = 106/242 (43.80%), Query Frame = 2
Query:  221 DRPK-YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 814
            DRP  Y G  S   P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  GV      W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP++ A+L+  E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:   54 DRPLWYPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.033e-14
Identity = 56/148 (37.84%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  347 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 790
            RE E+IH RWAMLG LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP++   LK  E+K+ RLAM +   F +QA  TGKGP+  L
Sbjct:  138 RECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR---NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.457e-12
Identity = 68/242 (28.10%), Postives = 92/242 (38.02%), Query Frame = 2
Query:  146 GVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPI 781
            GV+   R  +     + P+  W     P   G  +   P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG          G  +    WF+AGA            +P  +   S   +   Q++LMG+VE  R                                       FDPL LA          D D+   LK  E+K+ RLAM +M  F+ +A   GK P+
Sbjct:   39 GVSTTSRKLVVVAAAAAPKKSWI----PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of CK934371 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.245e-12
Identity = 61/204 (29.90%), Postives = 79/204 (38.73%), Query Frame = 2
Query:  260 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKGKELKNGRLAMFSMFGFFVQAIVTGKGPI 781
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG+VE  R                                       FDPL LA          D ++   LK  E+K+ RLAM +M  F+ +A   GK P+
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
The following BLAST results are available for this feature:
BLAST of CK934371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB13_SOLLC2.734e-2735.66Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB121_HORVU2.734e-2737.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB21_EUGGR4.366e-2555.56Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB24_ARATH4.518e-2238.10Chlorophyll a-b binding protein 4, chloroplastic O... [more]
LH18_EUGGR2.099e-1931.58Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4B_ARATH2.099e-1932.37Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH4.675e-1933.06Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4C_ARATH2.033e-1437.84Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4_SPIOL1.457e-1228.10Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC3.245e-1229.90Chlorophyll a-b binding protein CP24 10A, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934371 ID=CK934371; Name=CK934371; organism=Citrus sinensis; type=EST; length=943bp
GGGGATATTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTT
TCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCT
GGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGT
TGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCC
AGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCT
GAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTG
GGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTG
AGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGC
GTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGT
TTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATC
TTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCC
TGCCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGG
TCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACC
CACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGGCAAG
GAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTGT
TCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCACA
TTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGTT
CCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTAA
CATTATTCTATCTATCGTATGTGCTTTTTGTGGAAACTCTGTC
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