CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:50..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: XYLD_RHIME (Putative D-xylulose reductase OS=Rhizobium meliloti GN=R02526 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.025e-20
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  237 LGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            L P DVL+  + VG+CGSDVHY    +   FVV EPM++GHE AGV+ +VGS+V+ L  GD V +EPGI        K G YN+
Sbjct:   24 LSPTDVLIGIRTVGVCGSDVHYYTHGKIGPFVVNEPMILGHEAAGVVLEVGSQVRHLKKGDRVCMEPGIPDLSSRSSKLGIYNV 107          

HSP 2 Score: 35.039 bits (79), Expect = 9.025e-20
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 1
Query:  493 PEIKFFATPPVHGSLANQVVH 555
            P ++F+ATPPVHG L  +VVH
Sbjct:  109 PSVRFWATPPVHGCLTPEVVH 129          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.611e-18
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  183 AWLMGVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIFCNS 518
            A L G N ++I+   +P +   +VL++   VGICGSDV    T  C   V+ +P+VIGHE AG + KVG +V +L  GD V +EP   C  C+ CK G+YNL    + +C+S
Sbjct:    7 AVLHGANDVRIEKIPVPEINDDEVLIKIDCVGICGSDVKLYSTGTCGADVIDKPIVIGHEGAGTVVKVGDKVSSLRVGDRVAIEPTQPCRSCELCKRGKYNLCVEPR-YCSS 117          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: XYLD_AGRT5 (Putative D-xylulose reductase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=Atu4318 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-18
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  207 LKIQPFELPS------LGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            L ++ F++P       LGP DV +R   VGICGSDVHY    +   FVV  PMV+GHE +G + + GS+V  L  GD V +EPGI        K G YN+
Sbjct:   12 LSLRDFDIPGGAGSGELGPKDVRIRTHTVGICGSDVHYYTHGKIGHFVVNAPMVLGHEASGTVIETGSDVTHLKIGDRVCMEPGIPDPTSRASKLGIYNV 111          

HSP 2 Score: 33.8834 bits (76), Expect = 3.570e-18
Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 1
Query:  493 PEIKFFATPPVHGSLANQVVH 555
            P ++F+ATPP+HG L  +V+H
Sbjct:  113 PAVRFWATPPIHGCLTPEVIH 133          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: XYL2_YEAST (D-xylulose reductase OS=Saccharomyces cerevisiae GN=XYL2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.020e-17
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  243 PYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +V+++ KA GICGSD+HY    R A++VV+ PMV+GHE +G++  +G  VKTL  GD V LEPGI        K GRYNL
Sbjct:   31 PNEVIIQIKATGICGSDIHYYTHGRIANYVVESPMVLGHESSGIVALIGENVKTLKVGDRVALEPGIPDRFSPEMKEGRYNL 112          

HSP 2 Score: 23.8682 bits (50), Expect = 1.020e-17
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  493 PEIKFFATPPVHGSL 537
            P +KF ATPP  G+L
Sbjct:  114 PNLKFAATPPFDGTL 128          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: XYLD_MORMO (D-xylulose reductase OS=Morganella morganii PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.021e-17
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  237 LGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            LG  DV ++   VGICGSDVHY +  R   FVV EPMV+GHE +GVI   G  VK L  GD V +EPGI   +    + G YNL
Sbjct:   25 LGDDDVEIKIHTVGICGSDVHYYQHGRIGPFVVDEPMVLGHEASGVITAAGKNVKHLKVGDRVCMEPGIPDLQSPQSRAGIYNL 108          

HSP 2 Score: 30.0314 bits (66), Expect = 1.021e-17
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  493 PEIKFFATPPVHGSLANQVVH 555
            P ++F+ATPP+ G L   V+H
Sbjct:  110 PAVRFWATPPIDGCLRESVIH 130          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: XYLD_RHILO (Putative D-xylulose reductase OS=Rhizobium loti GN=mlr4915 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.327e-17
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  207 LKIQPFELP-SLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            L ++   LP  +GP DV +    VG+CGSDVHY        +VV+ PMV+GHE AG + + G+ V+T   GD V +EPG+        K G YN+
Sbjct:   12 LSLREIALPLDVGPDDVKIAIHTVGVCGSDVHYYTHGAIGSYVVRAPMVLGHEAAGTVVETGANVETFKAGDRVCMEPGVPNLSSRATKLGIYNV 106          

HSP 2 Score: 33.4982 bits (75), Expect = 8.327e-17
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  493 PEIKFFATPPVHGSLANQVVH 555
            P++ F+ATPPVHG LA   VH
Sbjct:  108 PDVSFWATPPVHGVLAPYAVH 128          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: XYL2_PICST (D-xylulose reductase OS=Pichia stipitis GN=XYL2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  198 VNTLKIQPFELPSLG-PYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            ++ +  + ++ P +  P DVLV+ K  GICGSD+H+    R  +FV+ +PMV+GHE AG + +VG  V +L  GD+V +EPGI     D  K G YNL
Sbjct:   12 IDDISFETYDAPEISEPTDVLVQVKKTGICGSDIHFYAHGRIGNFVLTKPMVLGHESAGTVVQVGKGVTSLKVGDNVAIEPGIPSRFSDEYKSGHYNL 109          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO_PIG (Sorbitol dehydrogenase (Fragment) OS=Sus scrofa GN=SORD PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.444e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  195 GVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPG 440
            G   L+++ + +P  GP  VL++  +VGICGSDVHY +  R  +FVVK+PMV+GHE +G   KVGS V  L PGD    EPG
Sbjct:   15 GPGDLRLENYPIPEPGPNXVLLKMHSVGICGSDVHYWQHGRIGNFVVKKPMVLGHEASGTXVKVGSLVTHLKPGDRXAXEPG 96          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO1_YEAST (Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SOR1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.145e-15
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  198 VNTLKIQPFELPSL-GPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            V  + I+   +P++  P+ V +  KA GICGSD+HY ++     +++K PMV+GHE +G + +VG  V  +  GD V +EPG+     D  K GRYNL
Sbjct:   14 VGDIAIEQRPIPTIKDPHYVKLAIKATGICGSDIHYYRSGGIGKYILKAPMVLGHESSGQVVEVGDAVTRVKVGDRVAIEPGVPSRYSDETKEGRYNL 111          

HSP 2 Score: 26.1794 bits (56), Expect = 1.145e-15
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  490 CPEIKFFATPPVHGSL 537
            CP + F ATPP+ G+L
Sbjct:  112 CPHMAFAATPPIDGTL 127          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: DHSO2_YEAST (Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=SOR2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.517e-15
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  198 VNTLKIQPFELPSL-GPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            V  + I+   +P++  P+ V +  KA GICGSD+HY ++     +++K PMV+GHE +G + +VG  V  +  GD V +EPG+     D  K G YNL
Sbjct:   14 VGDIAIEQRPIPTIKDPHYVKLAIKATGICGSDIHYYRSGGIGKYILKAPMVLGHESSGQVVEVGDAVTRVKVGDRVAIEPGVPSRYSDETKEGSYNL 111          

HSP 2 Score: 26.1794 bits (56), Expect = 5.517e-15
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  490 CPEIKFFATPPVHGSL 537
            CP + F ATPP+ G+L
Sbjct:  112 CPHMAFAATPPIDGTL 127          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
XYLD_RHIME9.025e-2050.00Putative D-xylulose reductase OS=Rhizobium melilot... [more]
DHSO_BOMMO2.611e-1841.96Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
XYLD_AGRT53.570e-1844.00Putative D-xylulose reductase OS=Agrobacterium tum... [more]
XYL2_YEAST1.020e-1751.22D-xylulose reductase OS=Saccharomyces cerevisiae G... [more]
XYLD_MORMO1.021e-1751.19D-xylulose reductase OS=Morganella morganii PE=1 S... [more]
XYLD_RHILO8.327e-1741.05Putative D-xylulose reductase OS=Rhizobium loti GN... [more]
XYL2_PICST1.433e-1642.86D-xylulose reductase OS=Pichia stipitis GN=XYL2 PE... [more]
DHSO_PIG2.444e-1650.00Sorbitol dehydrogenase (Fragment) OS=Sus scrofa GN... [more]
DHSO1_YEAST1.145e-1539.80Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisi... [more]
DHSO2_YEAST5.517e-1538.78Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
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