CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_BACLD (L-threonine 3-dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 33/93 (35.48%), Postives = 52/93 (55.91%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKI 506
            +P +  ++VL++ KA  ICG+DVH       A   VK P V GHE +G + +VG  V T+  G++V  E  I+C +C  C  G+ ++  +  I
Sbjct:   24 IPKIDKHEVLIKVKAASICGTDVHIYNWDEWAKSRVKPPYVFGHEFSGEVVQVGENVTTVKEGEYVSAETHIVCGKCLPCLTGKEHVCKKTLI 116          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D+L++ +   ICG+D+H       A   +  PMV+GHE  G +  VG EV+    GD V  E  I C  C +C+ GR +L
Sbjct:   21 PELGHNDLLIKIRKTAICGTDMHIYNWDEWAQKTIPVPMVVGHEYVGEVVAVGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALTY (L-threonine 3-dehydrogenase OS=Salmonella typhimurium GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALSV (L-threonine 3-dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALPK (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALPC (L-threonine 3-dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALPB (L-threonine 3-dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALPA (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALNS (L-threonine 3-dehydrogenase OS=Salmonella newport (strain SL254) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALHS (L-threonine 3-dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TDH_BACLD3.092e-1135.48L-threonine 3-dehydrogenase OS=Bacillus lichenifor... [more]
TDH_AERS43.092e-1138.37L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]
TDH_SALTY4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella typhimur... [more]
TDH_SALSV4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella schwarze... [more]
TDH_SALPK4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPC4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPB4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPA4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALNS4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella newport ... [more]
TDH_SALHS4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella heidelbe... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
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