CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALG2 (L-threonine 3-dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALEP (L-threonine 3-dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALDC (L-threonine 3-dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALCH (L-threonine 3-dehydrogenase OS=Salmonella choleraesuis GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SALA4 (L-threonine 3-dehydrogenase OS=Salmonella agona (strain SL483) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_PROAC (L-threonine 3-dehydrogenase OS=Propionibacterium acnes GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P  GP DV+V+    GICG+DVH  K    A   V  P+V+GHE  G I ++GSEV  L  G  V  E   +C RC  C  G+ +L
Sbjct:   21 PVAGPNDVIVKVMRTGICGTDVHIDKWDGWAAKTVHTPLVLGHEFCGEIVELGSEVNDLEVGQFVSGEGHYVCGRCRACLAGKRHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SHEPA (L-threonine 3-dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SHEHH (L-threonine 3-dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ESCF3 (L-threonine 3-dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+ GR +L
Sbjct:   21 PELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRAGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_AERHH (L-threonine 3-dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D+L++ +   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+ GR +L
Sbjct:   21 PELGHNDLLIKIRKTAICGTDIHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHL 106          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TDH_SALG24.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella gallinar... [more]
TDH_SALEP4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella enteriti... [more]
TDH_SALDC4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella dublin (... [more]
TDH_SALCH4.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella cholerae... [more]
TDH_SALA44.038e-1138.37L-threonine 3-dehydrogenase OS=Salmonella agona (s... [more]
TDH_PROAC4.038e-1143.02L-threonine 3-dehydrogenase OS=Propionibacterium a... [more]
TDH_SHEPA5.274e-1137.21L-threonine 3-dehydrogenase OS=Shewanella pealeana... [more]
TDH_SHEHH5.274e-1137.21L-threonine 3-dehydrogenase OS=Shewanella halifaxe... [more]
TDH_ESCF35.274e-1138.37L-threonine 3-dehydrogenase OS=Escherichia ferguso... [more]
TDH_AERHH5.274e-1136.05L-threonine 3-dehydrogenase OS=Aeromonas hydrophil... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
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