CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:50..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SYMTH (L-threonine 3-dehydrogenase OS=Symbiobacterium thermophilum GN=tdh PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 3
Query:  213 IQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKI 506
            +Q   +P++GP DVLV+ +A  ICG+D H       +   VK P+ IGHE AG +  VG EV     GD+V  E  I+C RC  C  G Y+L    KI
Sbjct:   19 LQEVPIPTIGPRDVLVKVRAASICGTDYHIYTWDPWSAGRVKPPLTIGHELAGEVVAVGREVTACKVGDYVSAETHIVCNRCPRCHMGEYHLCENTKI 116          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: YDJJ_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjJ OS=Escherichia coli (strain K12) GN=ydjJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  204 TLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVV-KEP---MVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            T+KI   E+P     +VL++ + VGICGSDVH  ++     F+  K+P   + +GHECAG +  VGS V+   PGD V +EPG+ C  C +C  G+YN+
Sbjct:   13 TMKIISAEIPVPKEDEVLIKVEYVGICGSDVHGFES---GPFIPPKDPNQEIGLGHECAGTVVAVGSRVRKFKPGDRVNIEPGVPCGHCRYCLEGKYNI 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_THET2 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKI 506
            +P  GP ++LVR +A  ICG+D+H  K    A   ++ P+V GHE +GV+E VG  VK    GDHV LE  ++C  C  C+ G Y++    KI
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVKRPQVGDHVSLESHVVCHACPACRTGNYHVCLNTKI 112          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_PYRKO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus kodakaraensis GN=tdh PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.752e-14
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIF 509
            ++P  GP +VL++  A  ICG+D+H  +    A   +K P ++GHE AG + +VG  V+ L  GD++ +E  I+C +C  CK  RY++    KIF
Sbjct:   23 DVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTKIF 117          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_THEON (Probable L-threonine 3-dehydrogenase OS=Thermococcus onnurineus (strain NA1) GN=tdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIF 509
            ++P  GP +VL++  A  ICG+D+H  +    A   +K P ++GHE AG + +VG  V T+  GD++  E  I+C +C  CK  RY++    KIF
Sbjct:   23 DIPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVIEVGPGVDTINVGDYISAETHIVCGKCYACKHNRYHVCQNTKIF 117          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_THET8 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tdh PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKI 506
            +P  GP ++LVR +A  ICG+D+H  K    A   ++ P+V GHE +GV+E VG  V+    GDHV LE  I+C  C  C+ G Y++    +I
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQI 112          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SOLUE (L-threonine 3-dehydrogenase OS=Solibacter usitatus (strain Ellin6076) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSR 497
            P++G  DVL+R    GICG+DVH  K    A   +  PM IGHE  G IE VGS V    PGD V  E  ++C RC +C  GR +L ++
Sbjct:   21 PAIGINDVLIRVLRTGICGTDVHIYKWDEWARETIHVPMAIGHEFVGRIEAVGSNVADFFPGDIVSGEGHVVCGRCRNCFAGRRHLCAK 109          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_PYRHO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus horikoshii GN=tdh PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIF 509
            ++P  GP +VL++  A  ICG+D+H  +    A   +K P ++GHE AG + ++G  V+ +  GD+V +E  I+C +C  C+ G+Y++    KIF
Sbjct:   23 DVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIF 117          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIF 509
            ++P  GP +VL++  A  ICG+D+H  +    A   ++ P ++GHE AG + +VG  V+ +  GD+V +E  I+C +C  CK G+Y++    KIF
Sbjct:   23 DVPKPGPGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACKRGQYHVCQNTKIF 117          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_PYRAB (Probable L-threonine 3-dehydrogenase OS=Pyrococcus abyssi GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIF 509
            ++P  GP +VL++  A  ICG+D+H  +    A   +K P ++GHE AG + +VG  V+ +  GD+V +E  I+C +C  C+ G+Y++    KIF
Sbjct:   23 DVPKPGPGEVLIKVIATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIF 117          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TDH_SYMTH7.863e-1541.84L-threonine 3-dehydrogenase OS=Symbiobacterium the... [more]
YDJJ_ECOLI1.027e-1442.42Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_THET21.027e-1441.94L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
TDH_PYRKO1.752e-1437.89Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_THEON2.288e-1437.89Probable L-threonine 3-dehydrogenase OS=Thermococc... [more]
TDH_THET85.096e-1440.86L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
TDH_SOLUE5.096e-1444.94L-threonine 3-dehydrogenase OS=Solibacter usitatus... [more]
TDH_PYRHO5.096e-1435.79Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_PYRFU5.096e-1436.84Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_PYRAB5.096e-1436.84Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
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