CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:50..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_DEIDV (L-threonine 3-dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E+P  GP D+L+R K   ICG+DVH  K    A   +  PMV+GHE  GV+  +GSEV+    GD V  E  + C  C +C+ GR +L
Sbjct:   19 EVPRPGPNDLLIRVKKGSICGTDVHIYKWDEWAQKTIPVPMVVGHEYVGVVAAMGSEVRGFNVGDRVSGEGHVTCGHCRNCRAGRRHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_COLP3 (L-threonine 3-dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E P LG  D+L++ K   ICG+D+H       A   V  PMV+GHE AG +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   19 EKPKLGHNDLLIKIKKTAICGTDIHIYNWDEWAQKTVPTPMVVGHEYAGEVVGIGQEVKGFTLGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_DEIRA (L-threonine 3-dehydrogenase OS=Deinococcus radiodurans GN=tdh PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E+P+ GP D+L+R +   ICG+DVH  K    A   V  PMV+GHE  GV+  +GSEV+    GD V  E  + C  C +C+ GR +L
Sbjct:   19 EVPTPGPNDLLIRIRKGSICGTDVHIYKWDDWASQTVPVPMVVGHEYVGVVAGMGSEVRGFEIGDRVSGEGHVTCGHCRNCRAGRRHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: YJMD_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjmD OS=Bacillus subtilis GN=yjmD PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  249 DVLVRKKAVGICGSDVH-YLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNLVSRDKIF 509
            +VLV+ K VGICGSD+H Y  T   A      P VIGHE  G +E VG+ V++L PGDHV +EP   C  C  C+ GR N+ ++  +F
Sbjct:   27 EVLVKVKRVGICGSDMHIYHGTNPLATL----PRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGRPNVCAKLSVF 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_RHIE6 (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  207 LKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            L ++   +P +GP DVL+R K   ICG+DVH     + A   +  PMV+GHE +G I ++GS V     G+ V  E  I+C +C +C+ GR +L
Sbjct:   17 LWMEDVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHL 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_RHIL3 (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +GP DVL+R K   ICG+DVH     + A   +  PMV+GHE +G I ++GS V     G+ V  E  I+C +C +C+ GR +L
Sbjct:   24 VPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHL 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_RHIEC (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +GP DVL+R K   ICG+DVH     + A   +  PMV+GHE +G I ++GS V     G+ V  E  I+C +C +C+ GR +L
Sbjct:   24 VPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHL 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ANAD2 (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +G +DV++R     ICG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+ V  E  + C  C +C+ GR +L
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHL 107          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ANADF (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +G +DV +R +   ICG+DVH       +   +  PM++GHE  GV++ VG EV+   PGD V  E  + C  C +C+ GR +L
Sbjct:   21 VPEVGVHDVRIRVRKSAICGTDVHIYNWDEWSQRTIPVPMIVGHEYVGVVDAVGGEVEAFHPGDRVSGEGHVTCGFCRNCRAGRRHL 107          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_RHISN (L-threonine 3-dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +GP DVL+R K   ICG+DVH     + A   +  PMV+GHE  G I +VGS V     G+ V  E  I+C +C +C+ GR +L
Sbjct:   24 VPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIAEVGSAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHL 110          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TDH_DEIDV6.656e-1443.18L-threonine 3-dehydrogenase OS=Deinococcus deserti... [more]
TDH_COLP31.483e-1343.18L-threonine 3-dehydrogenase OS=Colwellia psychrery... [more]
TDH_DEIRA1.937e-1343.18L-threonine 3-dehydrogenase OS=Deinococcus radiodu... [more]
YJMD_BACSU3.303e-1346.59Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_RHIE64.314e-1339.36L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
TDH_RHIL35.635e-1341.38L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_RHIEC5.635e-1341.38L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
TDH_ANAD25.635e-1340.23L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_ANADF9.612e-1337.93L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_RHISN1.255e-1242.53L-threonine 3-dehydrogenase OS=Rhizobium sp. (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
back to top