CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_RHILW (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +GP DVL+R +   ICG+DVH     + A   +  PMV+GHE +G I ++GS V     G+ V  E  I+C +C +C+ GR +L
Sbjct:   24 VPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHL 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ANASK (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain K) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +G +DV+++     ICG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+ V  E  + C  C +C+ GR +L
Sbjct:   21 VPEVGVHDVMIKVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHL 107          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ANADE (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +G +DV++R     ICG+DVH       +   V  PMV+GHE  G +E+VG+EV+   PG+ V  E  + C  C +C+ GR +L
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVERVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHL 107          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +GP DVL+R +   ICG+DVH     + A   +  PMV+GHE  G I ++GS V     G+ V  E  I+C +C +C+ GR +L
Sbjct:   24 VPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFCGEIAEIGSAVTKYHVGERVSGEGHIVCGKCRNCRAGRGHL 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ALISL (L-threonine 3-dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E P +G  D+L+R K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 EKPEMGHNDILIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHL 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_PROMH (L-threonine 3-dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  189 LMGVNTLKIQP------FELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +  ++ LK QP        +P LG  DV+++ +   ICG+DVH       +   +  PMV+GHE  G I  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:    1 MKALSKLKAQPGIWMTDVPVPELGHNDVMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYIGEIVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_VIBSL (L-threonine 3-dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E P +G  D+L+R K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 EKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHL 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_VIBFM (L-threonine 3-dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E P +G  D+L+R K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 EKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHL 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_VIBF1 (L-threonine 3-dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E P +G  D+L+R K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 EKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHL 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_VIBCM (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            ++P LG  D+L++ K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHL 108          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TDH_RHILW1.255e-1240.23L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_ANASK1.255e-1239.08L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ANADE1.255e-1239.08L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_AGRRK1.639e-1240.23L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]
TDH_ALISL2.141e-1239.77L-threonine 3-dehydrogenase OS=Aliivibrio salmonic... [more]
TDH_PROMH2.797e-1236.79L-threonine 3-dehydrogenase OS=Proteus mirabilis (... [more]
TDH_VIBSL3.652e-1239.77L-threonine 3-dehydrogenase OS=Vibrio splendidus (... [more]
TDH_VIBFM3.652e-1239.77L-threonine 3-dehydrogenase OS=Vibrio fischeri (st... [more]
TDH_VIBF13.652e-1239.77L-threonine 3-dehydrogenase OS=Vibrio fischeri (st... [more]
TDH_VIBCM3.652e-1238.64L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
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