CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:50..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_VIBCH (L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            ++P LG  D+L++ K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHL 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_VIBC3 (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            ++P LG  D+L++ K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHL 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SERP5 (L-threonine 3-dehydrogenase OS=Serratia proteamaculans (strain 568) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D++++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFTVGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ECO24 (L-threonine 3-dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK  + GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFMIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_PHOPR (L-threonine 3-dehydrogenase OS=Photobacterium profundum GN=tdh PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L+R K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   23 PEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHL 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_STRAW (L-threonine 3-dehydrogenase OS=Streptomyces avermitilis GN=tdh PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  186 WLMGVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            WLM V          P +GP DVL++    GICG+D+H       A   V+ P+V+GHE  G + + G +V  +  GD V  E  ++C +C +C+ GR +L
Sbjct:   14 WLMDVPE--------PEIGPGDVLIKVLRTGICGTDLHIRSWDGWAQQAVRTPLVLGHEFVGEVVETGRDVVDIKAGDRVSGEGHLVCGKCRNCQAGRRHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_RHIME (L-threonine 3-dehydrogenase OS=Rhizobium meliloti GN=tdh PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +GP DVL+R +   ICG+DVH     + A+  +  PMV+GHE  G + +VG  V     G+ V  E  I+C +C +C+ GR +L
Sbjct:   24 VPEIGPNDVLIRVRKSAICGTDVHIWNWDQWAEKTIPVPMVVGHEFMGEVVEVGPAVSKHHVGERVSGEGHIVCGKCRNCRAGRGHL 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_THETN (L-threonine 3-dehydrogenase OS=Thermoanaerobacter tengcongensis GN=tdh PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E+P +GP +VL++ KA  ICG+DVH       A   +K P  +GHE  G + ++G  V ++  GD V  E  I+C +C  C+ G  ++
Sbjct:   23 EIPKIGPDEVLIKVKATSICGTDVHIYVWNEWAKSRIKPPKTMGHEFVGEVVEIGENVTSVKVGDLVSAETHIVCGKCRACRTGNAHI 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SHISS (L-threonine 3-dehydrogenase OS=Shigella sonnei (strain Ss046) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SHIFL (L-threonine 3-dehydrogenase OS=Shigella flexneri GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TDH_VIBCH3.652e-1238.64L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=... [more]
TDH_VIBC33.652e-1238.64L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_SERP53.652e-1238.37L-threonine 3-dehydrogenase OS=Serratia proteamacu... [more]
TDH_ECO243.652e-1239.08L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
TDH_PHOPR4.770e-1239.53L-threonine 3-dehydrogenase OS=Photobacterium prof... [more]
TDH_STRAW6.230e-1235.64L-threonine 3-dehydrogenase OS=Streptomyces avermi... [more]
TDH_RHIME6.230e-1239.08L-threonine 3-dehydrogenase OS=Rhizobium meliloti ... [more]
TDH_THETN8.137e-1236.36L-threonine 3-dehydrogenase OS=Thermoanaerobacter ... [more]
TDH_SHISS8.137e-1239.08L-threonine 3-dehydrogenase OS=Shigella sonnei (st... [more]
TDH_SHIFL8.137e-1239.08L-threonine 3-dehydrogenase OS=Shigella flexneri G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
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