CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:50..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SHIF8 (L-threonine 3-dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SHIDS (L-threonine 3-dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SHIBS (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SHIB3 (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ECOUT (L-threonine 3-dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ECOSM (L-threonine 3-dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ECOSE (L-threonine 3-dehydrogenase OS=Escherichia coli (strain SE11) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ECOLU (L-threonine 3-dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ECOLI (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12) GN=tdh PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
[Close]
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_ECOLC (L-threonine 3-dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 3 
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P LG  D+L++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHL 106
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TDH_SHIF88.137e-1239.08L-threonine 3-dehydrogenase OS=Shigella flexneri s... [more]
TDH_SHIDS8.137e-1239.08L-threonine 3-dehydrogenase OS=Shigella dysenteria... [more]
TDH_SHIBS8.137e-1239.08L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_SHIB38.137e-1239.08L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_ECOUT8.137e-1239.08L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOSM8.137e-1239.08L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOSE8.137e-1239.08L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOLU8.137e-1239.08L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
TDH_ECOLI8.137e-1239.08L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOLC8.137e-1239.08L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
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