CK934373

Overview
NameCK934373
Unique NameCK934373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:50..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_YERPE (L-threonine 3-dehydrogenase OS=Yersinia pestis GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D++++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_YERPB (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D++++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_YERPA (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D++++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_YERP3 (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D++++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_YERE8 (L-threonine 3-dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D++++ +   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GD V  E  I C  C +C+GGR +L
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P +G  D+L++ K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   23 PEVGHNDILIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHL 108          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_PSEA6 (L-threonine 3-dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  225 ELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            E+P++G  D+L++ +   ICG+D+H       +   +  PMV+GHE  G + ++G EV+    GD V  E  I C  C +C+ GR +L
Sbjct:   19 EMPTVGHNDILIKIRKTAICGTDMHIYNWDEWSQNTIPVPMVVGHEYVGEVVEIGEEVRGFAIGDRVSGEGHITCGHCRNCRAGRRHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_STRGG (L-threonine 3-dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 3
Query:  186 WLMGVNTLKIQPFELPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            WLM V          P  GP DVL++    GICG+D+H       A   V  P+++GHE  G +  +GS+V  +  GD V  E  ++C +C +C  GR +L
Sbjct:   14 WLMDVPE--------PEYGPTDVLIKVLRTGICGTDLHIRAYDGWAQQAVTTPLILGHEFVGEVAAIGSDVADIATGDLVSGEGHLVCGKCRNCLAGRRHL 106          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_SINMW (L-threonine 3-dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  228 LPSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            +P +GP DVL+R +   ICG+DVH     + A   +  PMV+GHE  G I +VG  V     G+ V  E  I+C +C +C+ GR +L
Sbjct:   24 VPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIVEVGPAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHL 110          
BLAST of CK934373 vs. ExPASy Swiss-Prot
Match: TDH_VIBVY (L-threonine 3-dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=tdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.813e-11
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  231 PSLGPYDVLVRKKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDHVPLEPGIICWRCDHCKGGRYNL 488
            P LG  D+L++ K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GD V  E  I C  C +C+GGR +L
Sbjct:   23 PVLGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHL 108          
The following BLAST results are available for this feature:
BLAST of CK934373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TDH_YERPE1.063e-1138.37L-threonine 3-dehydrogenase OS=Yersinia pestis GN=... [more]
TDH_YERPB1.063e-1138.37L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPA1.063e-1138.37L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERP31.063e-1138.37L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERE81.063e-1138.37L-threonine 3-dehydrogenase OS=Yersinia enterocoli... [more]
TDH_VIBPA1.063e-1138.37L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]
TDH_PSEA61.063e-1135.23L-threonine 3-dehydrogenase OS=Pseudoalteromonas a... [more]
TDH_STRGG1.388e-1135.64L-threonine 3-dehydrogenase OS=Streptomyces griseu... [more]
TDH_SINMW1.388e-1140.23L-threonine 3-dehydrogenase OS=Sinorhizobium medic... [more]
TDH_VIBVY1.813e-1139.53L-threonine 3-dehydrogenase OS=Vibrio vulnificus (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934373 ID=CK934373; Name=CK934373; organism=Citrus sinensis; type=EST; length=556bp
GGGGGCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGG
TAGCTTAAAATGTTNNNTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTT
TTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGA
AAAGAAGGATGGAGAATAAGTTAACATGGCATGCTTGGCTTATGGGTGTC
AACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGA
TGTTTTAGTCAGGAAGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATT
ATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAACCTATGGTG
ATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAA
GACTTTGGTGCCCGGTGACCATGTGCCCCTGGAACCCGGGATCATTTGCT
GGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTAGTGTCCAGAGAT
AAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATC
back to top