CK934380

Overview
NameCK934380
Unique NameCK934380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12692 contig Csv1_Contig12692:522..1392. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934380 vs. ExPASy Swiss-Prot
Match: ANR29_HUMAN (Ankyrin repeat domain-containing protein 29 OS=Homo sapiens GN=ANKRD29 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 48/155 (30.97%), Postives = 84/155 (54.19%), Query Frame = 3 
Query:  123 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK--KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQIVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 581
            S TTAL  A+ QGH +VV+FL   G++       +G TAL +A++ GH+++V+ LL     I   +D+   G TAL +A +G  ++++  L+      +N     G + L IA++ G  ++V+ +L + G D+        TAL  A   G++++
Sbjct:   78 SGTTALFFAAQQGHNDVVRFLFGFGAS-TEFRTKDGGTALLAASQYGHMQVVETLLKHGANI---HDQLYDGATALFLAAQGGYLDVI-RLLLASGAKVNQPRQDGTAPLWIASQMGHSEVVRVML-LRGADRDAARNDGTTALLKAANKGYNDV 226
The following BLAST results are available for this feature:
BLAST of CK934380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
ANR29_HUMAN9.206e-1130.97Ankyrin repeat domain-containing protein 29 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934380 ID=CK934380; Name=CK934380; organism=Citrus sinensis; type=EST; length=871bp
GGGCTGGTATCAAAGCAAGAAATGGCTACGATGCATTCCACATTGCTGCT
AAGCAAGGATGCTTGGAGGTATTGAAGATCCTCATGGAGGCACTTCCTGA
ACTTTTGATGACTTTTGATTCCTCGAACACCACAGCATTACACACAGCTT
CCTCACAAGGCCATGTTGAAGTAGTGAAATTTCTCTTGGAGAAAGGTAGT
ACCCTAGCCACCATTGCTAGAAGCAATGGGAAAACGGCTTTGCATTCTGC
AGCTAGGAATGGACATCTGGAGATTGTGAAGGCCCTTTTGAGTAAAGAAC
CTGGCATTGTTTTGAGGAACGATAAGAAGGGTCAGACAGCTCTCCATATG
GCCGTTAAAGGACAGAGTATTGAACTTGTGGACGAGCTGGTAAAGGTTGA
GCCTGTTATAATCAACATGGTTGATGCCAAGGGAAACTCTGCATTGCATA
TAGCAACCCGTAAGGGCCGGGTTCAGATTGTTCAGAAGCTGCTGAATATC
AATGGAGTTGACAAAGCAGTCATCAACAAATCCAGAGAAACTGCTCTTGA
CACTGCTGAGAAAACTGGGCATTCTGAAATTGGAGTCATCTTAAAAGAGC
ATGGTGTCCCATGTGGCAAATCCATCAAGCCCCAAGCAAACTCAGCTCGA
GAACTAAAGCAGGCTGTTAGTGACATAAAGCATGAGGTTCATGACCAGCT
CGAGCACACACGTGAAACACGTAAACATGTGCATGGTATAGCTAAGAGGA
TCAACAAAATGCATACGGAAGGGCTTAACAANNNNNNCAACTCCACCACA
GTTGTAGCTGTCCTCATTGCCACCGTTGCCTTTGCTGCCATCTTCAGTGT
CCCAGGGCAATTTGCTGATAA
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