CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria australasica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.633e-38
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = 3
Query:   93 SVFHRGFSS--VIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGE 443
            S   R FSS  V+  LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPEVG +V +   FGAVESVKATSDVNSP+SG++VEVN +L+ +P L+N SPYEDGW+IKV+  N  E
Sbjct:   25 SPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSE 143          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BREBN (Glycine cleavage system H protein OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=gcvH PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.358e-37
Identity = 73/122 (59.84%), Postives = 94/122 (77.05%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            K+L+Y++ HEWV+V+GN A IGIT  AQ  LGD+V+VELPEVG T++QD  FG+VESVK  S++ +PV+GKVVEVN EL  +P LVNSSPYE  W+I VE+ +  EL KLMDAD+Y    +E
Sbjct:    5 KNLRYSEEHEWVRVEGNKAYIGITSFAQAELGDIVFVELPEVGATIQQDEPFGSVESVKTVSELYAPVTGKVVEVNGELEDAPELVNSSPYEQAWMIVVELSDTAELDKLMDADKYEAMVKE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_CARHZ (Glycine cleavage system H protein OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvH PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.170e-36
Identity = 76/127 (59.84%), Postives = 90/127 (70.87%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S V KDLKY+  HEW+KVDGN   IGITD AQ  LGD+V++ELP VG  +    SFG VESVKA SD+ +PVSGKVVEVNEE+  SP LVN  PY  GW+IKVE+ N  EL +L+  + Y K  EEE
Sbjct:    2 SVVPKDLKYSREHEWIKVDGNIGIIGITDFAQKSLGDIVFIELPGVGDEISAGDSFGVVESVKAASDLYAPVSGKVVEVNEEVIESPQLVNEDPYGKGWMIKVEISNEAELDELLSPEDYEKLLEEE 128          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACHK (Glycine cleavage system H protein OS=Bacillus thuringiensis subsp. konkukian GN=gcvH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+  +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++ D  FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPYE  W++KVE+ +A +++KL+ A++Y +   ++
Sbjct:    2 SIPNNLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACCZ (Glycine cleavage system H protein OS=Bacillus cereus (strain ZK / E33L) GN=gcvH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+  +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++ D  FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPYE  W++KVE+ +A +++KL+ A++Y +   ++
Sbjct:    2 SIPNNLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACC3 (Glycine cleavage system H protein OS=Bacillus cereus (strain 03BB102) GN=gcvH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+  +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++ D  FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPYE  W++KVE+ +A +++KL+ A++Y +   ++
Sbjct:    2 SIPNNLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACC0 (Glycine cleavage system H protein OS=Bacillus cereus (strain AH820) GN=gcvH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+  +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++ D  FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPYE  W++KVE+ +A +++KL+ A++Y +   ++
Sbjct:    2 SIPNNLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACAN (Glycine cleavage system H protein OS=Bacillus anthracis GN=gcvH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+  +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++ D  FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPYE  W++KVE+ +A +++KL+ A++Y +   ++
Sbjct:    2 SIPNNLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACAC (Glycine cleavage system H protein OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=gcvH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+  +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++ D  FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPYE  W++KVE+ +A +++KL+ A++Y +   ++
Sbjct:    2 SIPNNLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACAA (Glycine cleavage system H protein OS=Bacillus anthracis (strain A0248) GN=gcvH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+  +L+Y++ HEWVK +GN   IGIT  AQ+ LGD+V+VELPEVG T++ D  FG+VESVK  S++ +PVSGKVV VNEELS  P LVN SPYE  W++KVE+ +A +++KL+ A++Y +   ++
Sbjct:    2 SIPNNLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD 127          
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_FLAAU1.633e-3866.39Glycine cleavage system H protein, mitochondrial (... [more]
GCSH_BREBN2.358e-3759.84Glycine cleavage system H protein OS=Brevibacillus... [more]
GCSH_CARHZ1.170e-3659.84Glycine cleavage system H protein OS=Carboxydother... [more]
GCSH_BACHK7.584e-3653.17Glycine cleavage system H protein OS=Bacillus thur... [more]
GCSH_BACCZ7.584e-3653.17Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACC37.584e-3653.17Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACC07.584e-3653.17Glycine cleavage system H protein OS=Bacillus cere... [more]
GCSH_BACAN7.584e-3653.17Glycine cleavage system H protein OS=Bacillus anth... [more]
GCSH_BACAC7.584e-3653.17Glycine cleavage system H protein OS=Bacillus anth... [more]
GCSH_BACAA7.584e-3653.17Glycine cleavage system H protein OS=Bacillus anth... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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