CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAA2 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain JH1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.099e-34
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +L+ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAA1 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.099e-34
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +L+ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBHB (Glycine cleavage system H protein OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.271e-34
Identity = 69/124 (55.65%), Postives = 93/124 (75.00%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            K LK+ DSHEWV+ +G+ +ATIGI++HAQ+ LGDVV+V+LP+V   V+   SF  VESVKA SD+ SP++G+VVE+NEEL  SP L+N  PYE GWI+KV++ +  EL  L DA++Y    EEE
Sbjct:    3 KTLKFTDSHEWVRDNGDGTATIGISEHAQEMLGDVVFVDLPDVEDEVEAGESFSLVESVKAASDIYSPITGEVVEINEELEDSPELINEEPYEGGWIVKVKLSDPSELDDLKDAEEYLSSIEEE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STRM5 (Glycine cleavage system H protein OS=Stenotrophomonas maltophilia (strain R551-3) GN=gcvH PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.271e-34
Identity = 71/129 (55.04%), Postives = 87/129 (67.44%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            S +  DLK+  SHEW +V+GN   T+GI+DHAQ  LGD+VYVELPEVG T K +     VESVKA SDV SPVSG +VEVN  LS  P  +N   Y DGW+  VE+ NA EL +L+D D Y +  E+ED
Sbjct:    2 SEIPGDLKFLKSHEWARVEGNGRVTVGISDHAQGLLGDLVYVELPEVGATAKANEQIAVVESVKAASDVYSPVSGTIVEVNSALSDKPETINEDAYGDGWMYVVELSNAEELNELLDPDAYAEALEDED 130          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBSL (Glycine cleavage system H protein OS=Vibrio splendidus (strain LGP32) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.211e-33
Identity = 67/122 (54.92%), Postives = 92/122 (75.41%), Query Frame = 3
Query:  132 LKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            LK+ADSHEWVK +G+ + TIGI++HAQ+ LGDVV+V+LP+    ++   SF  VESVKA SD+ +P+SG++VE+NEEL  SP L+N  PYE GWI+KV+M +A EL  L DA++Y    EE+
Sbjct:    5 LKFADSHEWVKDNGDGTVTIGISEHAQELLGDVVFVDLPDTEDEIEAGESFSLVESVKAASDIYAPISGEIVEINEELEDSPELINEEPYEGGWIVKVKMSDASELNNLKDAEEYLSSVEED 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAAW (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MW2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.211e-33
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +++ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAAS (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MSSA476) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.211e-33
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN ATIGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +++ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_MARMS (Glycine cleavage system H protein OS=Marinomonas sp. (strain MWYL1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.211e-33
Identity = 68/122 (55.74%), Postives = 93/122 (76.23%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYT 476
            S++ ++LKYADSHEWV  +G+ + T+GITDHAQD LGDVVYVELPEVG  V     F  VESVKA SD+ +PV+G+V+EVN+ L+ +P L+N +P+E  WI K+++ NA +L KL+DA  Y+
Sbjct:    2 STIPENLKYADSHEWVLDNGDGTVTVGITDHAQDLLGDVVYVELPEVGTEVTATEQFSLVESVKAASDIYAPVNGEVIEVNDALNDAPELINEAPFEGAWIAKIKLSNAADLDKLLDAAGYS 123          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVY (Glycine cleavage system H protein OS=Vibrio vulnificus (strain YJ016) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 68/124 (54.84%), Postives = 93/124 (75.00%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   ++   SF  VESVKA SD+ +PV+G+VVEVNEELS SP L+N  PYE GWI+KV++ +  EL  L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVU (Glycine cleavage system H protein OS=Vibrio vulnificus GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 68/124 (54.84%), Postives = 93/124 (75.00%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   ++   SF  VESVKA SD+ +PV+G+VVEVNEELS SP L+N  PYE GWI+KV++ +  EL  L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_STAA27.099e-3452.80Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA17.099e-3452.80Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_VIBHB9.271e-3455.65Glycine cleavage system H protein OS=Vibrio harvey... [more]
GCSH_STRM59.271e-3455.04Glycine cleavage system H protein OS=Stenotrophomo... [more]
GCSH_VIBSL1.211e-3354.92Glycine cleavage system H protein OS=Vibrio splend... [more]
GCSH_STAAW1.211e-3352.00Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAS1.211e-3352.00Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_MARMS1.211e-3355.74Glycine cleavage system H protein OS=Marinomonas s... [more]
GCSH_VIBVY1.581e-3354.84Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_VIBVU1.581e-3354.84Glycine cleavage system H protein OS=Vibrio vulnif... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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