CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH3_SULSO (Probable glycine cleavage system H protein 3 OS=Sulfolobus solfataricus GN=gcvH3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.637e-12
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 3 
Query:  129 DLKYA-DSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQ--YTKFCEE 491
            DL Y  + H WV+++ NS  +IG+TD  Q   G +  V   + G  V   +   ++ES K       P+ G+V +VNEE+  +P+++N  PY D WI+K+ +++   +K+     Q  Y +F EE
Sbjct:   11 DLLYEPEKHVWVRIEDNSVVSIGVTDLGQYMAGKIFQVTAKQKGEKVNGRSVLFSIESAKWIGKFRLPIEGEVFDVNEEVVKNPSIINERPY-DSWIVKIRVEDMDIIKRTFKPIQEVYKQFEEE 134
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH2_AQUAE (Glycine cleavage system H protein 2 OS=Aquifex aeolicus GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 3 
Query:  126 KDLKY-ADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDN-AGELKKLMDADQYTKFCEEEDSKH*VN 515
            KDL Y  ++  W KV +  + T+G+TD  Q   G ++ + +   G  VK+     ++ES K    V + + G+VVE NE+L   P L+N  PY +GWI K++  N   +L+ L+  ++  +  +E   +  VN
Sbjct:   15 KDLYYDIENQVWFKVNEDGTVTVGVTDIGQARAGKIINIRIKPPGKYVKKGKPVASLESGKWAGPVPADIEGEVVERNEKLFDKPDLINEDPYGEGWIAKLKPANLERDLQDLVTGEEAVQKLKEYIEREDVN 147
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH3_SULSO7.637e-1232.80Probable glycine cleavage system H protein 3 OS=Su... [more]
GCSH2_AQUAE1.303e-1131.58Glycine cleavage system H protein 2 OS=Aquifex aeo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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