CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STACT (Glycine cleavage system H protein OS=Staphylococcus carnosus (strain TM300) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 3 
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V ++LKY+  HEWVKV+G++ TIGIT++AQ  LGD+V+VELPE    +++  SFG+VESVK  S++ +PVSG VVE+NEEL  SP  VN SPYE  W++KV++++  +L  L+ ADQY +   E
Sbjct:    2 AVPEELKYSKEHEWVKVEGDTVTIGITEYAQGELGDIVFVELPETEDDIEESESFGSVESVKTVSELYAPVSGSVVEINEELEDSPEFVNESPYEKAWMVKVKLNDESQLDDLLSADQYKEMIGE 126
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_AERS4 (Glycine cleavage system H protein OS=Aeromonas salmonicida (strain A449) GN=gcvH PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 67/128 (52.34%), Postives = 91/128 (71.09%), Query Frame = 3 
Query:  114 SSVIKDLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S +  +LKYA SHEW++V+ N  A +GIT+HAQD LGD+V+V+LPEVG  +         ESVKA SD+ SPVSG++V +NEEL  SP LVNS PY  GW+ ++++D+AGEL  L+DA+ Y    +EE
Sbjct:    2 SHIPSELKYATSHEWIRVEANGEAVVGITEHAQDLLGDMVFVDLPEVGKQIGAGDDCAVAESVKAASDIYSPVSGEIVAINEELEGSPELVNSDPYGAGWLFRIKLDDAGELANLLDAEGYQNLVDEE 129
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBPA (Glycine cleavage system H protein OS=Vibrio parahaemolyticus GN=gcvH PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.065e-33
Identity = 69/124 (55.65%), Postives = 92/124 (74.19%), Query Frame = 3 
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            K LK+ DSHEWV+ +G+ + TIGI++HAQ+ LGDVV+V+LP+V   V+   SF  VESVKA SD+ SPV+G+VVE+NEEL  SP L+N  PYE GWI+KV++ +  EL  L DA++Y    EEE
Sbjct:    3 KTLKFTDSHEWVRDNGDGTVTIGISEHAQEMLGDVVFVDLPDVEDEVEAGESFSLVESVKAASDIYSPVTGEVVEINEELEDSPELINEEPYEGGWIVKVKLSDPSELDDLKDAEEYLSSIEEE 126
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAEQ (Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvH PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.065e-33
Identity = 63/125 (50.40%), Postives = 93/125 (74.40%), Query Frame = 3 
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  + KY+  HEWVK++ N ATIGIT++AQ+ LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGK+VEVNEEL  SP  VN SPYE  W++K+E+ +  +L++L+ ADQY++   E
Sbjct:    2 AVPSEFKYSKEHEWVKIENNVATIGITEYAQNELGDIVFVELPETDDELNEGDTFGSVESVKTVSELYAPISGKIVEVNEELEDSPEFVNESPYEKAWMVKIEISDDSQLEELLSADQYSEMIGE 126
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAES (Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvH PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.697e-33
Identity = 62/125 (49.60%), Postives = 93/125 (74.40%), Query Frame = 3 
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  + KY+  HEWVK++ N AT+GIT++AQ+ LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGK+VEVNEEL  SP  VN SPYE  W++K+E+ +  +L++L+ ADQY++   E
Sbjct:    2 AVPSEFKYSKEHEWVKIENNVATVGITEYAQNELGDIVFVELPETDDELNEGDTFGSVESVKTVSELYAPISGKIVEVNEELEDSPEFVNESPYEKAWMVKIEISDDSQLEELLSADQYSEMIGE 126
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAAT (Glycine cleavage system H protein OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.009e-33
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 3 
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +++ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAAE (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Newman) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.009e-33
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 3 
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +++ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAAC (Glycine cleavage system H protein OS=Staphylococcus aureus (strain COL) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.009e-33
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 3 
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +++ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAA8 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain NCTC 8325) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.009e-33
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 3 
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +++ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
[Close]
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STAA3 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain USA300) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.009e-33
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 3 
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V  +LKY+  HEWVKV+GN A IGIT++AQ  LGD+V+VELPE    + +  +FG+VESVK  S++ +P+SGKVVEVNEEL  SP  VN SPYE  W++KVE+ +  +++ L+ A++Y++   E
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE 126
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_STACT1.581e-3352.00Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_AERS41.581e-3352.34Glycine cleavage system H protein OS=Aeromonas sal... [more]
GCSH_VIBPA2.065e-3355.65Glycine cleavage system H protein OS=Vibrio paraha... [more]
GCSH_STAEQ2.065e-3350.40Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAES2.697e-3349.60Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAT6.009e-3351.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAE6.009e-3351.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAC6.009e-3351.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA86.009e-3351.20Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA36.009e-3351.20Glycine cleavage system H protein OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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