CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_CELJU (Glycine cleavage system H protein OS=Cellvibrio japonicus (strain Ueda107) GN=gcvH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.009e-33
Identity = 71/129 (55.04%), Postives = 89/129 (68.99%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            S + K+LKY  SHEW +V+ + + TIGITDHAQD LGDVVYVE PEVG  V      G VESVKA SD+ S VSGKVV VNE L  +P  VNSSPY++GW  +V+ D+  EL + + AD+Y +  E E+
Sbjct:    2 SDIRKELKYLSSHEWARVEEDGTVTIGITDHAQDALGDVVYVETPEVGSRVSLGEEAGVVESVKAASDIYSLVSGKVVAVNELLQDAPETVNSSPYDEGWFFRVQPDDVSELDEALSADEYRELLESEE 130          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_THEMA (Glycine cleavage system H protein OS=Thermotoga maritima GN=gcvH PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.848e-33
Identity = 63/124 (50.81%), Postives = 90/124 (72.58%), Query Frame = 3
Query:  123 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            +K  KY  +HEWV ++   AT+GIT+HAQ+ LGDVVYV+LPEVG  VK+     ++ESVKA +DV +P+SGK+VEVNE+L + P L+N  P  +GW+ K+E+ + GEL+ L+D   Y +FC +E
Sbjct:    1 MKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEFCAQE 124          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_AERHH (Glycine cleavage system H protein OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.848e-33
Identity = 67/128 (52.34%), Postives = 91/128 (71.09%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S +  +LKYA SHEW++V+ N  A +GIT+HAQ+ LGD+V+V+LPEVG  V         ESVKA SD+ SPVSG+++ VNEEL  SP LVNS PY  GW+ ++++D+AGEL  L+DA+ Y    +EE
Sbjct:    2 SHIPSELKYATSHEWIRVEANGEAVVGITEHAQELLGDMVFVDLPEVGKQVGAGDDCAVAESVKAASDIYSPVSGEILAVNEELEGSPELVNSDPYGAGWLFRIKLDDAGELANLLDAEGYQNVVDEE 129          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCM (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.025e-32
Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   +    SF  VESVKA SD+ +PV+G V+EVNE+L +SP L+N  PY+ GWI+KV+M +  ELK L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCH (Glycine cleavage system H protein OS=Vibrio cholerae GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.025e-32
Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   +    SF  VESVKA SD+ +PV+G V+EVNE+L +SP L+N  PY+ GWI+KV+M +  ELK L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBC3 (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.025e-32
Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            K LK+ +SHEWV+ +G+ + TIGI++HAQ+ LGDVV+VELPE+   +    SF  VESVKA SD+ +PV+G V+EVNE+L +SP L+N  PY+ GWI+KV+M +  ELK L DA++Y    EE+
Sbjct:    3 KTLKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_LISMO (Glycine cleavage system H protein OS=Listeria monocytogenes GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.025e-32
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTK 479
            S+ KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +  S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY+ GWI+K+E     ++K L+ +D Y K
Sbjct:    2 SLPKDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEK 122          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_LISMH (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.025e-32
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTK 479
            S+ KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +  S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY+ GWI+K+E     ++K L+ +D Y K
Sbjct:    2 SLPKDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEK 122          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACP2 (Glycine cleavage system H protein OS=Bacillus pumilus (strain SAFR-032) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.025e-32
Identity = 65/126 (51.59%), Postives = 88/126 (69.84%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S  KDL+Y++ HEWVKV+G    IGIT  AQ  LGD+V+VELPEVG  +  D  FG+VESVK  S++ +P++G +VEVN+EL  SP  VN SPYE  W+I VE  +  E++ LM A+QY +  +E+
Sbjct:    2 STPKDLRYSEEHEWVKVEGEKVRIGITHFAQSELGDIVFVELPEVGDKITADEPFGSVESVKTVSELYAPINGTIVEVNDELDDSPEFVNDSPYEKAWMIVVEPADTSEIENLMTAEQYEEMTKED 127          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_LISMF (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTK 479
            S+ KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +  S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY+ GWI+K+E     ++K L+ +D Y K
Sbjct:    2 SLPKDLLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEK 122          
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_CELJU6.009e-3355.04Glycine cleavage system H protein OS=Cellvibrio ja... [more]
GCSH_THEMA7.848e-3350.81Glycine cleavage system H protein OS=Thermotoga ma... [more]
GCSH_AERHH7.848e-3352.34Glycine cleavage system H protein OS=Aeromonas hyd... [more]
GCSH_VIBCM1.025e-3253.23Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBCH1.025e-3253.23Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBC31.025e-3253.23Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_LISMO1.025e-3255.37Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_LISMH1.025e-3255.37Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_BACP21.025e-3251.59Glycine cleavage system H protein OS=Bacillus pumi... [more]
GCSH_LISMF1.339e-3255.37Glycine cleavage system H protein OS=Listeria mono... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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