CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_LISMC (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTK 479
            S+ KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +  S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY+ GWI+K+E     ++K L+ +D Y K
Sbjct:    2 SLPKDLLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEK 122          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_GEOSW (Glycine cleavage system H protein OS=Geobacillus sp. (strain WCH70) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32
Identity = 64/122 (52.46%), Postives = 89/122 (72.95%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            K+L+Y++ HEWV+V+G+   IGITD AQ  LGD+V+VELPEVG  +  +  FG+VESVK  S++ +P+SGKVVEVNEEL+ +P  VN SPYE  W+I VE  +  E+  L+ A+QY +  +E
Sbjct:    5 KELRYSEEHEWVRVEGDKVRIGITDFAQSELGDIVFVELPEVGAEITANEPFGSVESVKTVSELYAPISGKVVEVNEELNDNPEYVNESPYEKAWMIVVEPYDMSEIDNLLTAEQYEEMVKE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ANASK (Glycine cleavage system H protein OS=Anaeromyxobacter sp. (strain K) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32
Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            +DL+Y   HEW +  G++  +GITD AQ  LGDVVYVELP+VG  VK+  SFG VES KA S++ +P+SGKV+EVN+ LS +P  +N  PYE+GW+I +E  +  +L+ LMDA  Y  F EE++
Sbjct:    5 EDLRYTREHEWARRKGSAIVVGITDFAQQQLGDVVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQE 128          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ANAD2 (Glycine cleavage system H protein OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gcvH PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32
Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            +DL+Y   HEW +  G++  +GITD AQ  LGDVVYVELP+VG  VK+  SFG VES KA S++ +P+SGKV+EVN+ LS +P  +N  PYE+GW+I +E  +  +L+ LMDA  Y  F EE++
Sbjct:    5 EDLRYTREHEWARRKGSAIVVGITDFAQQQLGDVVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQE 128          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_BACA2 (Glycine cleavage system H protein OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvH PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.982e-32
Identity = 65/126 (51.59%), Postives = 88/126 (69.84%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S  KD++Y+  HEWVKV+   A IGIT  AQ  LGD+V+VELPEVG  +K D  FG+VESVK  S++ +P++G V EVNE+L  SP  VN SPYE  W+I VE  +A E++ LM ++QY +  +E+
Sbjct:    2 STPKDMRYSKEHEWVKVEDGKARIGITHFAQAELGDIVFVELPEVGAEIKADEPFGSVESVKTVSELYAPINGTVTEVNEDLDDSPEFVNESPYEKAWMIVVEPADAEEIENLMTSEQYDEMTQED 127          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_STRMK (Glycine cleavage system H protein OS=Stenotrophomonas maltophilia (strain K279a) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 68/129 (52.71%), Postives = 85/129 (65.89%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNS-ATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            S +  DLK+  SHEW +V+GN   T+GI+DHAQ  LGD+VYVELPEVG   K       VESVKA SDV SP+SGKVVEVN  LS  P  +N   Y +GW+  VE+ NA E+ +L+D D Y +  E +D
Sbjct:    2 SEIPGDLKFLKSHEWARVEGNGRVTVGISDHAQGLLGDLVYVELPEVGADAKAGEQIAVVESVKAASDVYSPISGKVVEVNSALSDKPETINEDAYGEGWMFVVELTNAEEVNELLDPDAYAEALENDD 130          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_SCHPO (Putative glycine cleavage system H protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPBP19A11.01 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  138 YADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDSKH 506
            +   HEWVKVDG+  T+GIT +A + LG+VV+VELPE   TV      GAVESVK+ SDV SPVSG V  +NE L  SP  V+SSP E+GWI K+++ +  ELK L++ + Y +FC+EED+ H
Sbjct:   47 FTKEHEWVKVDGDVGTVGITSYAANALGEVVFVELPEPETTVSVGDGIGAVESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDESYAQFCKEEDASH 169          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_PSEA6 (Glycine cleavage system H protein OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 64/128 (50.00%), Postives = 92/128 (71.88%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S++  DL+YA +HEWV+ +G+   T+GI++HAQ+ LGD+V+VELP+VG TV         ESVKA SDV +P+ G++V VNE+L  SP LVNS PY DGW+ +++ D+A E++ L+DA+ Y    EEE
Sbjct:    2 SNIPSDLRYATTHEWVRPEGDGTFTVGISEHAQELLGDMVFVELPDVGATVSAGDDIAVAESVKAASDVYAPIGGEIVGVNEDLEDSPELVNSDPYGDGWLFRIKADDADEVEGLLDAEGYENSIEEE 129          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_MARAV (Glycine cleavage system H protein OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 65/129 (50.39%), Postives = 91/129 (70.54%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            S +  DLKY ++H+WV+VD + +AT+GITD AQ+ LGDVVY+ +PE+G TV      G  ESVK+ SDV SPV+G+V+E+NE+L   P +VN  PY DGW+ KV++ + GEL+ LMDA  Y +    E+
Sbjct:    2 SEIPSDLKYIETHQWVRVDADGTATVGITDFAQEQLGDVVYIGVPEMGATVNGGEEAGVAESVKSASDVFSPVTGEVIEINEKLEDEPEIVNEDPYGDGWMFKVKLADEGELEGLMDAAAYAEHVAAEE 130          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ANOFW (Glycine cleavage system H protein OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 62/126 (49.21%), Postives = 90/126 (71.43%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+ K+L+Y+  HEWV+V+GN+  IGITD AQ  LGD+V+VELPEVG  +  +  FG+VESVK  S++ +P+SGKVV VNEEL+ +P  VN SPY+  W+I +E  +  E+  L+ A+QY +   ++
Sbjct:    2 SIPKELRYSQEHEWVRVEGNTVRIGITDFAQSELGDIVFVELPEVGAQLTANEPFGSVESVKTVSELYAPISGKVVAVNEELNDNPEYVNESPYDKAWMIVIEPSDLSEVDNLLTAEQYEQMINQD 127          
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_LISMC1.339e-3255.37Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_GEOSW1.339e-3252.46Glycine cleavage system H protein OS=Geobacillus s... [more]
GCSH_ANASK1.339e-3251.61Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_ANAD21.339e-3251.61Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_BACA22.982e-3251.59Glycine cleavage system H protein OS=Bacillus amyl... [more]
GCSH_STRMK3.895e-3252.71Glycine cleavage system H protein OS=Stenotrophomo... [more]
GCSH_SCHPO3.895e-3252.85Putative glycine cleavage system H protein, mitoch... [more]
GCSH_PSEA63.895e-3250.00Glycine cleavage system H protein OS=Pseudoalterom... [more]
GCSH_MARAV3.895e-3250.39Glycine cleavage system H protein OS=Marinobacter ... [more]
GCSH_ANOFW3.895e-3249.21Glycine cleavage system H protein OS=Anoxybacillus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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