CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_YERE8 (Glycine cleavage system H protein OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.644e-32
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            S+V  DLKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V   +     ESVKA SD+ +P+SG+++ VN EL SSP LVNS+PY DGW+  ++  +  EL  L+DA+ Y    EE
Sbjct:    2 SNVPADLKYASSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSEVSAGSDCAVAESVKAASDIYAPISGEIIAVNAELESSPELVNSAPYTDGWLFSIKASDESELDSLLDAEAYLATIEE 128          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_SACD2 (Glycine cleavage system H protein OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.644e-32
Identity = 68/129 (52.71%), Postives = 89/129 (68.99%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            S +  +LKY +SHEW +V+ + + TIGITDHAQ+ LGDVV+VE+PEVG  V      G VESVKA SD+ SPVSG+V+ VNE L  +P  VNSSPY+DGW  KV+ D+  EL+K +  + Y    E +D
Sbjct:    2 SELRSELKYLESHEWARVEEDGTVTIGITDHAQEALGDVVFVEVPEVGSQVSIGEEAGVVESVKAASDIYSPVSGEVIAVNEALEDAPETVNSSPYDDGWFFKVKPDDLDELEKALSMEDYKAAIESDD 130          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_METI4 (Glycine cleavage system H protein OS=Methylacidiphilum infernorum (isolate V4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.677e-32
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            ++  D  Y D+HEWV V G+ AT+GIT+HAQ  L D+VY+ELP+VG    Q A  G VESVKA SD+ +PVSG+++ VN +L   P+L+NS+PY +GWI K++M N  EL  L DA+ Y +  ++++
Sbjct:    2 NIPSDRLYTDTHEWVNVSGDVATVGITEHAQRELSDIVYIELPKVGERFNQKAVVGVVESVKAASDLYAPVSGEILAVNTQLVEQPSLINSNPYGEGWIFKMKMTNPDELSSLKDAEAYQELLQDKE 128          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_HALOH (Glycine cleavage system H protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.677e-32
Identity = 61/125 (48.80%), Postives = 89/125 (71.20%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            +V ++L Y  +HEW+KVDG++A +G+TD+AQ  LGD+V+VELPEV     Q   F  +ESVKA SDV  PV G+V+E NEEL  +P LVN  PY  GW++K+++ +  EL+ LM +++Y ++ EE
Sbjct:    2 NVPENLMYTKNHEWIKVDGDTALVGVTDYAQKELGDIVFVELPEVSDEFAQSEGFAVLESVKAVSDVYLPVGGEVLEANEELLENPELVNQEPYASGWLVKIKLADKKELEDLMSSEEYARYLEE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_CHRVO (Glycine cleavage system H protein OS=Chromobacterium violaceum GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.677e-32
Identity = 65/123 (52.85%), Postives = 88/123 (71.54%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTK 479
            S++  +LKY DSHEW++++ + S T+GIT HAQ+ LGD+V+VELP+VG ++ +D   G VESVKA SDV  P++G+V+ VNEEL   P L NS PY DGW  K++  NA +L  LMDA  Y K
Sbjct:    2 SNIPAELKYVDSHEWLRLEADGSVTVGITAHAQELLGDIVFVELPKVGASLAKDEQAGVVESVKAASDVYCPIAGEVLAVNEELEGEPELANSDPYGDGWFFKIKPANAADLNGLMDAAAYAK 124          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ALTMD (Glycine cleavage system H protein OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.677e-32
Identity = 66/128 (51.56%), Postives = 92/128 (71.88%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S++  DL+YA +HEWV+ +G+   T+GI++HAQ  LGD+V+VELP+VG  V         ESVKA SDV +P+SG+VVEVNE+L  SP LVNS PY DGW+ K++ D+A E++ L+DA+ Y    +EE
Sbjct:    2 SNIPTDLRYAATHEWVRPEGDGVFTVGISEHAQGLLGDMVFVELPDVGDAVSTGDDICVAESVKAASDVYAPISGEVVEVNEDLEDSPELVNSDPYGDGWLFKIKADDAAEVEGLLDAEGYENSIDEE 129          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_OCEIH (Glycine cleavage system H protein OS=Oceanobacillus iheyensis GN=gcvH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.133e-31
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            S+ +DL Y+  HEWVK +     IGITD AQD LGD+V+VELPE+G  +K D  FG+VESVK  S++ +PVSGKVVE+N++L  SP  VN SPYE  W+I +E  +  EL++L+ A+ Y  F ++
Sbjct:    2 SLPQDLLYSKEHEWVKQEDGKLRIGITDFAQDELGDIVFVELPEIGEELKVDDPFGSVESVKTVSELYAPVSGKVVEINDDLEDSPEYVNESPYEKAWMIVIEPSDEKELEELLSAENYEAFIQD 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_VIBF1 (Glycine cleavage system H protein OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.933e-31
Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            KDLK+  SHEWV+ +G+ + T+GI+DHAQ  LGDVV+V+LPEV   V     F  VESVKA SD+ SPV+G +VE+NEEL  SP LVN  PYE GWI ++++ ++ EL+ L+ +D Y +  +EE
Sbjct:    3 KDLKFTTSHEWVRDNGDGTVTVGISDHAQGLLGDVVFVDLPEVDDEVTTGEGFSLVESVKAASDIYSPVTGVIVEINEELEDSPELVNEEPYESGWIARIKLSDSSELESLIPSDTYLESLDEE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ALKOO (Glycine cleavage system H protein OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvH PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.933e-31
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = 3
Query:  123 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            +  L Y+  HEWVKV+GN A IGITD AQ  LG++V+VELPEV   + Q  +F  VESVKA SD  SPVSGKV+EVNEEL  +P L+N   + + WIIKVE+ N  EL+ L+   +Y +FCE+E
Sbjct:    4 VAGLLYSKDHEWVKVEGNEAYIGITDFAQHALGEIVFVELPEVDDEIAQGDAFSVVESVKAASDAYSPVSGKVLEVNEELDGAPELLNEDAFAN-WIIKVELTNPSELEGLLSDKEYAEFCEKE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_SALAR (Glycine cleavage system H protein OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.525e-31
Identity = 65/128 (50.78%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+V  +LKY+  HEW++ + +   T+GIT+HAQ+ LGD+V+V+LPEVG TV         ESVKA SD+ +PVSG++V VN+ LS SP LVNS PY DGWI K++  N  EL+ L+DA  Y    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYADGWIFKIKASNESELESLLDATAYEALLEDE 129          
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_YERE86.644e-3251.18Glycine cleavage system H protein OS=Yersinia ente... [more]
GCSH_SACD26.644e-3252.71Glycine cleavage system H protein OS=Saccharophagu... [more]
GCSH_METI48.677e-3248.82Glycine cleavage system H protein OS=Methylacidiph... [more]
GCSH_HALOH8.677e-3248.80Glycine cleavage system H protein OS=Halothermothr... [more]
GCSH_CHRVO8.677e-3252.85Glycine cleavage system H protein OS=Chromobacteri... [more]
GCSH_ALTMD8.677e-3251.56Glycine cleavage system H protein OS=Alteromonas m... [more]
GCSH_OCEIH1.133e-3151.20Glycine cleavage system H protein OS=Oceanobacillu... [more]
GCSH_VIBF11.933e-3152.42Glycine cleavage system H protein OS=Vibrio fische... [more]
GCSH_ALKOO1.933e-3154.84Glycine cleavage system H protein OS=Alkaliphilus ... [more]
GCSH_SALAR2.525e-3150.78Glycine cleavage system H protein OS=Salmonella ar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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