CK934385

Overview
NameCK934385
Unique NameCK934385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934385_ssr401 microsatellite CK934385_ssr401:401..412. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:57..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_RUBXD (Glycine cleavage system H protein OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.525e-31
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            + + +DL Y  +HEW +++G++AT+GITDHAQ+ LGDVV+VELPEVG +V+    FG +ESVKA SD+ SPVSG+V EVN  L  SP  VN  PY +GW+++V +    E   L+  ++Y +  EEE+
Sbjct:    2 AEIPQDLVYTRTHEWARIEGDAATVGITDHAQEELGDVVFVELPEVGSSVQAGEPFGTIESVKAVSDLYSPVSGEVTEVNTSLEESPEKVNEDPYGEGWLLRVRL---SEEPDLLSPEEYARRLEEEE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_PARL1 (Glycine cleavage system H protein OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.525e-31
Identity = 64/122 (52.46%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  123 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCE 488
            + D+++ D HEWV+VDG+ ATIGITD+AQ+ LGDVV+VELPEVG  +        VESVKA S+V SPVSG+V++VN ++  +PA VN +   DGW IK+ + +  EL KLMD   Y++F E
Sbjct:    1 MSDIRFTDQHEWVRVDGDIATIGITDYAQEQLGDVVFVELPEVGKDIAAGDEAAVVESVKAASEVYSPVSGEVIDVNSDIEKTPAGVNENAMGDGWFIKLRLADPSELDKLMDEAAYSEFVE 122          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_DROME (Glycine cleavage system H protein, mitochondrial OS=Drosophila melanogaster GN=ppl PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.525e-31
Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKF 482
            S + K+ +Y + HEWV+V  G++A +GI+ +AQ+ LGDVV+ +LPE G  +KQD   GA+ESVKA S+V SPVSGKV+E N E+  +PALVNSS YE GW+ KV++ N  EL+ LM  DQY  F
Sbjct:   35 SLLAKERRYTNKHEWVEVVSGSNAIVGISSYAQEALGDVVFAQLPEPGTELKQDDECGALESVKAASEVYSPVSGKVIEKNAEVEDTPALVNSSCYEKGWLFKVDLKNPKELEALMTEDQYKAF 158          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ALISL (Glycine cleavage system H protein OS=Aliivibrio salmonicida (strain LFI1238) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.525e-31
Identity = 64/124 (51.61%), Postives = 90/124 (72.58%), Query Frame = 3
Query:  126 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            KDLK+  SHEWV+ +G+ + T+GI++HAQ  LGDVV+V+LP+V   V    +F  VESVKA SD+ +P+SG +VE+NEEL  SP LVN  PYE GWI ++++ + G+L+ L+  DQY +  EEE
Sbjct:    3 KDLKFTASHEWVRENGDGTVTVGISNHAQGLLGDVVFVDLPDVDDEVTAGENFSLVESVKAASDIYAPISGVIVEINEELEDSPELVNEEPYEGGWIARIKLSDDGDLENLIPGDQYLESIEEE 126          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_LISW6 (Glycine cleavage system H protein OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 3
Query:  117 SVIKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTK 479
            S+ KDL Y + HEWVK D  S  IGITD AQD LGD+V+VELPEVG TV +  S G++ESVK  SD  +PV+GKVV VNE L   P L+NS+PY+ GWI+K+      ++  L+ +D Y K
Sbjct:    2 SLPKDLLYTEEHEWVKADDGSYIIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLTEVEEADVTALLSSDDYEK 122          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_KLEP3 (Glycine cleavage system H protein OS=Klebsiella pneumoniae (strain 342) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 494
            S+V  +LKY+  HEW++ + +   T+GIT+HAQ+ LGD+V+V+LPEVG TV+  A     ESVKA SD+ +P+SG++V VNEEL+ SP LVNS PY DGWI K++  +  ++  L+DA  Y    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYSDGWIFKIKASDEAQVAALLDATAYEALLEDE 129          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_ERWCT (Glycine cleavage system H protein OS=Erwinia carotovora subsp. atroseptica GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 63/129 (48.84%), Postives = 94/129 (72.87%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 497
            S+V  +LKYA SHEWV  +G+   ++GIT+HAQ+ LGD+V+++LPEVG  V         ESVKA SD+ +P+SG+VVEVNE+L +SP LVNS+PY DGW+ ++++ +  +L +L+DA+ Y    EE++
Sbjct:    2 SNVPTELKYATSHEWVLHEGDGIYSVGITEHAQELLGDMVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEVVEVNEDLENSPELVNSAPYTDGWLFRIKISDESDLDELLDAEGYQASLEEDE 130          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_CYTH3 (Glycine cleavage system H protein OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=gcvH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 62/116 (53.45%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  129 DLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYT 476
            +LKY+  HEWV+V+G +A +GITD AQ  LGD+VY+++  VG T+ ++A FG +E+VK  SD+  PVSG+V+E N EL S+P LVNS PY  GWI+KV + NA +L  L+DA  YT
Sbjct:    6 ELKYSKDHEWVRVEGQTAYVGITDFAQKELGDIVYLDVTSVGQTIDKEAIFGTIEAVKTVSDLFMPVSGEVLEFNAELESAPELVNSDPYGKGWIVKVTLANASDLDALLDAAAYT 121          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_YERPY (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.625e-31
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            S+V  +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V   +     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++  +  EL  L+DAD Y    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of CK934385 vs. ExPASy Swiss-Prot
Match: GCSH_YERPS (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.625e-31
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  114 SSVIKDLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 491
            S+V  +LKYA SHEWV+ DG+   ++GIT+HAQ+ LGD+V+V+LPEVG  V   +     ESVKA SD+ +P+SG++V VN EL +SP LVNS+PY DGW+  ++  +  EL  L+DAD Y    EE
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
The following BLAST results are available for this feature:
BLAST of CK934385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_RUBXD2.525e-3149.22Glycine cleavage system H protein OS=Rubrobacter x... [more]
GCSH_PARL12.525e-3152.46Glycine cleavage system H protein OS=Parvibaculum ... [more]
GCSH_DROME2.525e-3154.03Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ALISL2.525e-3151.61Glycine cleavage system H protein OS=Aliivibrio sa... [more]
GCSH_LISW63.297e-3153.72Glycine cleavage system H protein OS=Listeria wels... [more]
GCSH_KLEP33.297e-3149.22Glycine cleavage system H protein OS=Klebsiella pn... [more]
GCSH_ERWCT3.297e-3148.84Glycine cleavage system H protein OS=Erwinia carot... [more]
GCSH_CYTH33.297e-3153.45Glycine cleavage system H protein OS=Cytophaga hut... [more]
GCSH_YERPY5.625e-3151.18Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPS5.625e-3151.18Glycine cleavage system H protein OS=Yersinia pseu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934385 ID=CK934385; Name=CK934385; organism=Citrus sinensis; type=EST; length=822bp
GGGGGAAGTGCGTTCCGAAAGTGAAGTGAGAAACAAAAGACATGGCTTCA
AGGTTGTTGTGGGCTTCAAGGGCTGCTTCTTACCTCAGGATCTCTGTCTT
CCACAGAGGATTTTCTTCTGTTATAAAGGATCTAAAGTATGCTGACTCTC
ATGAATGGGTTAAGGTTGATGGTAACTCTGCAACCATTGGTATAACTGAC
CATGCTCAAGATCATTTAGGCGATGTTGTGTATGTTGAATTACCAGAGGT
AGGGGTTACAGTAAAGCAAGATGCCAGCTTTGGTGCAGTTGAAAGTGTCA
AGGCTACTAGTGATGTTAATTCTCCTGTTTCTGGGAAAGTGGTTGAAGTT
AATGAAGAGCTCAGCAGTTCACCTGCTTTGGTCAACTCAAGCCCATACGA
GGATGGATGGATTATAAAAGTGGAGATGGACAATGCTGGTGAATTGAAGA
AGTTGATGGATGCTGATCAATACACCAAGTTCTGTGAAGAAGAAGATTCA
AAACACTGAGTGAACCTCTGGCCGTGTAGGAATTCTCAGCACCCTTCCGG
AATGACCTATGTCATGCACGGAGAAACCATTCTCTATCAAGGAATCCAAA
AGTGCACGTTTTCTTTCTGGATGTTTTTATCCAAATATGTACTTCTATGT
CTCATTTACTGTCTTCAGGGCAATTGAGTTTGGTGGAATATTTCTATCTA
AACTGAGAATAATAATTTGGGGTGTGGAAGTGATGTAACCATTTGGTGGT
TTGAAATTTGTTAAGGGTTTTGATAATCAAAATTAACCATTTAGGAGAAA
AAAAAAAAAAAAAAAAAAAAAA
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