CK934387

Overview
NameCK934387
Unique NameCK934387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_YARLI (40S ribosomal protein S0 OS=Yarrowia lipolytica GN=RPS0 PE=3 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 7.973e-65
Identity = 116/194 (59.79%), Postives = 151/194 (77.84%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRE 708
            DIQ +LAA+ H+G+KN   Q   YVFK+R DG+ IIN+GKTWEK+Q+AAR+I A+ NP D++  SAR YGQRAVLKFA +  A AIAGR TPG+FTN +  SF EPRLLI+TDPRTDHQ IKEA+  NIP IA  DTDSP+ +VD+ IP NNKG+HS+G ++W+++R VL++RG +   + +W VM DL+FYR+
Sbjct:   12 DIQNLLAAQTHIGSKNVQVQNIPYVFKQRADGVNIINVGKTWEKIQLAARIIAAVPNPADVVAISARTYGQRAVLKFANHCGATAIAGRFTPGSFTNYITRSFKEPRLLIVTDPRTDHQAIKEASYVNIPVIALVDTDSPVEFVDVAIPCNNKGRHSVGLVWWMISREVLRLRGALEDRNTEWSVMPDLYFYRD 205          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA2_SCHPO (40S ribosomal protein S0-B OS=Schizosaccharomyces pombe GN=rps0b PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.041e-64
Identity = 121/202 (59.90%), Postives = 153/202 (75.74%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            P  L+  + DI+ +LAA+ H+G+KN + +ME YV+KRR+DGI+IINLGKTWEKL +AARVI  IENP D+ V S+RPYG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+I+TDPR D Q IKEA+  NIP IA CDTDS + +VD+ IP NNKG  SIG  ++LLAR VL++RG I     W+VM DL+FYR+
Sbjct:    8 PSVLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_TOXGO (40S ribosomal protein SA OS=Toxoplasma gondii PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.776e-64
Identity = 121/202 (59.90%), Postives = 151/202 (74.75%), Query Frame = 1
Query:  109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK--WDVMVDLFFYRE 708
            +LS +E  I  ML  + H+GTKN + +M  YVFK  ++GI++INL KTWEK+ MAARVIVAIENP D++V SARPYG RAVLKF++Y  A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q ++E+A  N+P IA CDTDSP+ +VDI IP NNKGK SI  ++WLLAR VL +RG + P     WDVMVD+F +R+
Sbjct:    8 KLSLQEDSIAKMLICKAHIGTKNVEHKMRPYVFKSTSEGIHLINLAKTWEKILMAARVIVAIENPADVLVISARPYGSRAVLKFSQYVGAQAIAGRWTPGMLTNQITQKFMEPRLLIVTDPRTDAQAVRESAYANVPVIALCDTDSPLEHVDICIPCNNKGKESIALMYWLLAREVLYLRGEL-PSRSVPWDVMVDMFLWRD 208          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_DICDI (40S ribosomal protein SA OS=Dictyostelium discoideum GN=rpsA PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.815e-64
Identity = 122/202 (60.40%), Postives = 147/202 (72.77%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            P  L+  + DI  MLA + HLG  N D +ME Y +KR+++G +IINL KTWEK+Q+AARVIVAIENP DI V SA+P GQRAVLKFA +  A A +GR TPGTFTNQ+Q+ F EPRLLI+ DP  D QP+ EA+  NIPTIA CDT S +  VDI IP NN+GK+SI  +FWLLAR VL +RGTI     W V VDLF YR+
Sbjct:    5 PAALNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNGHFIINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFSGRFTPGTFTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIAIPCNNRGKNSIALMFWLLAREVLYLRGTIPRNTTWSVKVDLFIYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_CHLVR (40S ribosomal protein SA OS=Chlorohydra viridissima PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.964e-63
Identity = 121/199 (60.80%), Postives = 148/199 (74.37%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            LS KE D+   LAA VHLG+ N     + YVFKR++DGI+IINL KTWEKL +AAR+I +IENP D+ V S+RPYG RAVLKFA+ T A  IAGR TPGTFTNQ+Q  F EPRLLI TDP+ D+Q + EA+  NIP IA C+TDSP+R+VD  IP NN+G  SIG ++W+LAR VL +RG I     W+VM DLFFYR+
Sbjct:    8 LSLKEEDVVKFLAAGVHLGSTNVGSSCQGYVFKRKSDGIHIINLRKTWEKLILAARIIASIENPADVCVISSRPYGTRAVLKFAQSTGAIPIAGRFTPGTFTNQIQKRFREPRLLISTDPQHDNQALTEASYVNIPVIALCNTDSPLRFVDCAIPCNNRGIQSIGTMWWILAREVLHLRGIISRKTPWNVMPDLFFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_USTMA (40S ribosomal protein S0 OS=Ustilago maydis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.171e-62
Identity = 113/202 (55.94%), Postives = 150/202 (74.26%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            P  L+  E DI ++LAA+ H+GTKN D QM  Y++KRR DGI+++N+GKTWEK+  AAR++ AIENP DI V S R YG RAVLKFA  T A AIAGR TPG+FTN +  SF EPR++++TDPR DHQ I+EA+  NIP I+F D+DSP+++VD+ IP N +G+HS+G L+WLL R VL+++     G    VM D+FFYR+
Sbjct:    5 PAALNPTEEDISLLLAAQTHIGTKNADKQMAPYIYKRRADGIHLLNIGKTWEKIVFAARILAAIENPADICVISGRQYGHRAVLKFAAQTGATAIAGRFTPGSFTNYITRSFKEPRVIVVTDPRVDHQAIREASYVNIPCISFVDSDSPLKFVDVAIPGNVRGRHSVGLLWWLLCRTVLRIK-----GGDLSVMPDMFFYRD 201          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_THEAN (40S ribosomal protein SA OS=Theileria annulata GN=TA10185 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 111/205 (54.15%), Postives = 148/205 (72.20%), Query Frame = 1
Query:   94 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            A    +L+  E  I+MML A+VH+GTKN + +M +YV+ R  +G+++INL  T EKL++AAR IV + NP +++V SARPYG RAVLKF+ Y  +H IAGR  PGT TNQ+   F EPRLL+ TDPRTD Q +KE++  ++P IA CDTDSP+ YVDI IP NNKGK SI  ++WLLAR VL +R  ++    WDV+VD FF+R+
Sbjct:    2 AAPTSKLTPDEDSIRMMLTAKVHIGTKNVENKMRKYVYSRTQEGVHLINLAHTLEKLKVAARAIVTVSNPEEVVVVSARPYGSRAVLKFSHYVGSHPIAGRWIPGTLTNQITQKFIEPRLLVATDPRTDAQSLKESSYVSLPVIALCDTDSPLNYVDIAIPCNNKGKESIALMYWLLAREVLYLRDQLKRWMPWDVLVDTFFWRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_BRUMA (40S ribosomal protein SA OS=Brugia malayi GN=Bm1_41245 PE=3 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.401e-61
Identity = 116/200 (58.00%), Postives = 148/200 (74.00%), Query Frame = 1
Query:  121 KEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG--TIRPGHKWD---VMVDLFFYR 705
            KE D   +LA + H+G  NCDFQME+YV+KRR DGI+II+L KTWEKL +AAR I AI+NPGD+ V SARPY QRA+LKFA +T +  I GR TPG  TNQ+Q  F EPRLLI++DPR DHQ + EA+   +P I+FC+TDSP++++DI IP NNKG  SIG ++WLLAR VL ++G  T + G   D   +M DL+FYR
Sbjct:   11 KEEDAIKLLACQTHVGAANCDFQMEQYVWKRRADGIHIIHLRKTWEKLLLAARAIAAIDNPGDVCVVSARPYAQRALLKFAAHTGSTPIFGRFTPGCLTNQIQKQFKEPRLLIVSDPRVDHQAVTEASYVGVPVISFCNTDSPLKFIDIAIPCNNKGVQSIGLMWWLLAREVLLIKGKMTRQTGFVLDDKEIMPDLYFYR 210          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_LACTC (40S ribosomal protein S0 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 113/194 (58.25%), Postives = 146/194 (75.26%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYRE 708
            D Q++LAA VHLG+KN     E YVFK R DG+ ++N+GKTWEK+ +AAR+I AI NP D++  S+R YGQRAVLKF+ +T A AIAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG +++LLAR VL++RG+ +     W +M DL+FYR+
Sbjct:   13 DAQLLLAANVHLGSKNVQVHQEPYVFKTRPDGVNVVNVGKTWEKIVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFSAHTGATAIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKESSYVNIPVIALTDLDSPSEYVDVAIPCNNKGKHSIGLIWYLLAREVLRLRGSLVDRTQPWSIMPDLYFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_THEPA (40S ribosomal protein SA OS=Theileria parva GN=TP04_0748 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.095e-61
Identity = 110/205 (53.66%), Postives = 148/205 (72.20%), Query Frame = 1
Query:   94 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            A    +L+  E  I+MML A+VH+GTKN + +M +YV+ R  +G+++INL  T EKL++AAR IV + NP +++V SARPYG RAVLKF+ Y  +H IAGR  PGT TNQ+   F EPRLL+ TDPRTD Q ++E++  ++P IA CDTDSP+ YVDI IP NNKGK SI  ++WLLAR VL +R  ++    WDV+VD FF+R+
Sbjct:    2 AAPTSKLTPDEDSIRMMLTAKVHIGTKNVENKMRKYVYSRTQEGVHLINLAHTLEKLKVAARAIVTVSNPEEVVVVSARPYGSRAVLKFSHYVGSHPIAGRWIPGTLTNQITQKFIEPRLLVATDPRTDAQSLRESSYVSLPVIALCDTDSPLNYVDIAIPCNNKGKESIALMYWLLAREVLYLRDQLKRWMPWDVLVDTFFWRD 206          
The following BLAST results are available for this feature:
BLAST of CK934387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_YARLI7.973e-6559.7940S ribosomal protein S0 OS=Yarrowia lipolytica GN... [more]
RSSA2_SCHPO1.041e-6459.9040S ribosomal protein S0-B OS=Schizosaccharomyces ... [more]
RSSA_TOXGO1.776e-6459.9040S ribosomal protein SA OS=Toxoplasma gondii PE=2... [more]
RSSA_DICDI8.815e-6460.4040S ribosomal protein SA OS=Dictyostelium discoide... [more]
RSSA_CHLVR1.964e-6360.8040S ribosomal protein SA OS=Chlorohydra viridissim... [more]
RSSA_USTMA2.171e-6255.9440S ribosomal protein S0 OS=Ustilago maydis GN=RPS... [more]
RSSA_THEAN1.838e-6154.1540S ribosomal protein SA OS=Theileria annulata GN=... [more]
RSSA_BRUMA2.401e-6158.0040S ribosomal protein SA OS=Brugia malayi GN=Bm1_4... [more]
RSSA_LACTC3.135e-6158.2540S ribosomal protein S0 OS=Lachancea thermotolera... [more]
RSSA_THEPA4.095e-6153.6640S ribosomal protein SA OS=Theileria parva GN=TP0... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_F03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934387 ID=CK934387; Name=CK934387; organism=Citrus sinensis; type=EST; length=710bp
GGGATCACAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCT
ACAGGGAGCC
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