CK934387

Overview
NameCK934387
Unique NameCK934387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_ZYGRC (40S ribosomal protein S0 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.537e-59
Identity = 111/193 (57.51%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 705
            D Q++LAA  HLG +N     E YVFK R DG+ ++++GKTWEKL +AAR+I AI NP DI+  S+R +GQRAVLKF+ +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W VM DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFKTRPDGVNVVDVGKTWEKLVLAARIIAAIPNPEDIVAISSRTFGQRAVLKFSAHTGATPIAGRFTPGSFTNYITRSFKEPRLIIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSVMPDLYFYR 205          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_LEIIN (40S ribosomal protein SA OS=Leishmania infantum GN=LinJ36.5570 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.537e-59
Identity = 109/208 (52.40%), Postives = 146/208 (70.19%), Query Frame = 1
Query:   85 TGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            T   +  + L  KE+D Q +LA   H+GT+N    M++Y++ R  +G +II+L   WEKL +AARVI A+ENP D+ V S+R YG RA+ KF+++       GR  PGTFTNQ+Q  F +PR+L++TDPRTDHQ I+EA+L NIP IA CDTD+P+ YVDI IP NN+G  SIG ++WLLAR VL++RGTI     W+  VDLFFYR+
Sbjct:    2 TAVESGSKVLRMKESDAQKLLAMRCHIGTRNQSSAMKKYIYGRTAEGSHIIDLHMMWEKLILAARVIAAVENPKDVCVCSSRLYGTRAIYKFSQHVGTSFHGGRFIPGTFTNQIQKKFVQPRVLVVTDPRTDHQAIREASLVNIPVIALCDTDAPLEYVDIAIPCNNRGIKSIGMMYWLLAREVLRLRGTIVRSVPWEEKVDLFFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_ASHGO (40S ribosomal protein S0 OS=Ashbya gossypii GN=RPS0 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.538e-59
Identity = 110/194 (56.70%), Postives = 144/194 (74.23%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYRE 708
            D Q++LAA VHLG+KN     E Y++K R DG+ II++GKTWEK+ +AAR+I AI N  D++  S+R YGQRAVLKF+ +T A AIAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D +SP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR+
Sbjct:   13 DAQLLLAANVHLGSKNVQVHQEPYLYKTRPDGVNIIHIGKTWEKIVLAARIIAAIPNAEDVVAISSRTYGQRAVLKFSAHTGATAIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLESPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_CAEBR (40S ribosomal protein SA OS=Caenorhabditis briggsae GN=rps-0 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.115e-58
Identity = 108/200 (54.00%), Postives = 149/200 (74.50%), Query Frame = 1
Query:  124 EADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI--RPGHKWD---VMVDLFFYRE 708
            E D+  +LA + HLG+ N +FQM++YV+KRR DG  IIN+ KTWEKL +AAR I A+ENP D++V SARPY QRA+LKFA +T A AI GR +PG  TNQ+Q +F EPRLL+++DPR DHQ + EA+   +P I+F +T+SP++ +DIG+P NNKG+ SIG ++W+LAR +L +RG I  + G   D   +M DL+FYR+
Sbjct:   12 EEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLLAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLDGKEIMPDLYFYRD 211          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_CAEEL (40S ribosomal protein SA OS=Caenorhabditis elegans GN=rps-0 PE=1 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 1.902e-58
Identity = 106/200 (53.00%), Postives = 148/200 (74.00%), Query Frame = 1
Query:  124 EADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKW-----DVMVDLFFYRE 708
            E D+  +LA + HLG+ N +FQM++YV+KRR DG  IIN+ KTWEKL +AAR I A+ENP D++V SARPY QRA+LKFA +T A AI GR +PG  TNQ+Q +F EPRLL+++DPR DHQ + EA+   +P I+F +T+SP++ +DIG+P NNKG+ SIG ++W+LAR +L +RG I     +     ++M DL+FYR+
Sbjct:   12 EEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLLAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRD 211          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA2_VANPO (40S ribosomal protein S0-B OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS0B PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.484e-58
Identity = 110/193 (56.99%), Postives = 139/193 (72.02%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 705
            D Q++LAA  HLG +N     E YVF  R DG+ +IN+GKTWEK+ +AAR+I AI NP D+   S+R YGQRAVLKF+ +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNTRPDGVNVINVGKTWEKIVLAARIIAAIPNPEDVCAISSRTYGQRAVLKFSAHTGATPIAGRFTPGSFTNYITRSFKEPRLIIVTDPRSDFQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLVWYLLAREVLRLRGALVDRTQPWAIMPDLYFYR 205          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA1_VANPO (40S ribosomal protein S0-A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS0A PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.484e-58
Identity = 110/193 (56.99%), Postives = 139/193 (72.02%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 705
            D Q++LAA  HLG +N     E YVF  R DG+ +IN+GKTWEK+ +AAR+I AI NP D+   S+R YGQRAVLKF+ +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNTRPDGVNVINVGKTWEKIVLAARIIAAIPNPEDVCAISSRTYGQRAVLKFSAHTGATPIAGRFTPGSFTNYITRSFKEPRLIIVTDPRSDFQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLVWYLLAREVLRLRGALVDRTQPWAIMPDLYFYR 205          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_LEIMA (40S ribosomal protein SA OS=Leishmania major GN=LmjF36.5010 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.237e-58
Identity = 107/199 (53.77%), Postives = 143/199 (71.86%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L  KE+D Q +LA   H+GT+N    M++Y++ R  +G +II++   WEKL +AARVI A+ENP D+ V S+R YG RA+ KF+++       GR  PGTFTNQ+Q  F +PR+L++TDPRTDHQ I+EA+L NIP IA CDTD+P+ YVDI IP NN+G  SIG ++WLLAR VL++RGTI     W+  VDLFFYR+
Sbjct:   11 LRMKESDAQKLLAMRCHIGTRNQSSAMKKYIYGRTAEGSHIIDVHMMWEKLILAARVIAAVENPKDVCVCSSRLYGTRAIYKFSQHVGTSFHGGRFIPGTFTNQIQKKFVQPRVLVVTDPRTDHQAIREASLVNIPVIALCDTDAPLEYVDIAIPCNNRGIKSIGMMYWLLAREVLRLRGTIVRSVPWEEKVDLFFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_LEIBR (40S ribosomal protein SA OS=Leishmania braziliensis GN=LbrM35_V2.5370 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.534e-58
Identity = 107/208 (51.44%), Postives = 146/208 (70.19%), Query Frame = 1
Query:   85 TGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            T   +  + L  KE+D Q +LA   H+GT+N    M++Y++ R  +G +II++   WEKL +AARVI A+ENP D+ V S+R YG RA+ KF+++       GR  PGTFTNQ+Q  F +PR+L++TDPRTDHQ I+EA+L NIP IA CDTD+P+ +VDI IP NN+G  SIG ++WLLAR VL++RGTI     W+  VDLFFYR+
Sbjct:    2 TAVESGSKVLRMKESDAQKLLAMRCHIGTRNQSSAMKKYIYGRTAEGSHIIDVHMLWEKLILAARVIAAVENPKDVCVCSSRLYGTRAIYKFSQHVGTSFHGGRFIPGTFTNQIQKKFMQPRVLVVTDPRTDHQAIREASLVNIPVIALCDTDAPLDFVDIAIPCNNRGIKSIGMMYWLLAREVLRLRGTIVRSVPWEEKVDLFFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_ECHGR (40S ribosomal protein SA OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.835e-56
Identity = 104/199 (52.26%), Postives = 142/199 (71.36%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L  KE DI++M+AA+VHLG+ N ++QM++YV+ R ++G +II+L KTWEKL +AAR I AIENP D+++   +P  QR  LKF  YT   ++ GR TPG FTNQ+Q+ F EPRLLI+ DP+ DHQP++E +  NIP I FC+TDSP++ VDIGIP NN  K+SI  + W+LAR V ++ G        DV++DLF  RE
Sbjct:    8 LELKEDDIRLMVAAKVHLGSTNANYQMQQYVYDRNDEGNHIIHLNKTWEKLLLAARAICAIENPADVVIIGGQPTWQRGALKFGHYTGTTSVPGRFTPGAFTNQIQSGFKEPRLLIVCDPKGDHQPVREGSAVNIPVIGFCNTDSPLQCVDIGIPCNN-DKYSIALMLWMLAREVRRIWGLDPRSQPGDVIMDLFLMRE 205          
The following BLAST results are available for this feature:
BLAST of CK934387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ZYGRC6.537e-5957.5140S ribosomal protein S0 OS=Zygosaccharomyces roux... [more]
RSSA_LEIIN6.537e-5952.4040S ribosomal protein SA OS=Leishmania infantum GN... [more]
RSSA_ASHGO8.538e-5956.7040S ribosomal protein S0 OS=Ashbya gossypii GN=RPS... [more]
RSSA_CAEBR1.115e-5854.0040S ribosomal protein SA OS=Caenorhabditis briggsa... [more]
RSSA_CAEEL1.902e-5853.0040S ribosomal protein SA OS=Caenorhabditis elegans... [more]
RSSA2_VANPO2.484e-5856.9940S ribosomal protein S0-B OS=Vanderwaltozyma poly... [more]
RSSA1_VANPO2.484e-5856.9940S ribosomal protein S0-A OS=Vanderwaltozyma poly... [more]
RSSA_LEIMA4.237e-5853.7740S ribosomal protein SA OS=Leishmania major GN=Lm... [more]
RSSA_LEIBR5.534e-5851.4440S ribosomal protein SA OS=Leishmania braziliensi... [more]
RSSA_ECHGR8.835e-5652.2640S ribosomal protein SA OS=Echinococcus granulosu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_F03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934387 ID=CK934387; Name=CK934387; organism=Citrus sinensis; type=EST; length=710bp
GGGATCACAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCT
ACAGGGAGCC
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