CK934387

Overview
NameCK934387
Unique NameCK934387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_SCHJA (40S ribosomal protein SA OS=Schistosoma japonicum GN=SJCHGC06078 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.276e-54
Identity = 102/193 (52.85%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            D+++MLAA VH+G  N +FQM  YV  R  D  +II L KTWEK+ ++AR I AI+   D+    +RP+ QRAVLKFA YT A A+AGR TPG FTNQ Q+ F EPRLL+++DP +DHQ + EA+  N+P IA C+TDSP+  VDI IP NNK  HSI  ++W LAR V ++RG      +W V+ DLF YR+
Sbjct:   14 DLRLMLAAHVHVGETNMNFQMSTYVHGRTKDNFHIIKLDKTWEKILLSARAIAAIDTASDVFAIGSRPFSQRAVLKFANYTGATAMAGRFTPGAFTNQKQSCFREPRLLVVSDPLSDHQAVMEASSVNVPLIALCNTDSPLTRVDIVIPCNNKSTHSIAVVWWFLAREVRRIRGEDTRLQQWSVLPDLFLYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_GIALA (40S ribosomal protein SA OS=Giardia lamblia GN=GL50803_7766 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.666e-54
Identity = 98/202 (48.51%), Postives = 140/202 (69.31%), Query Frame = 1
Query:   91 TATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            T+ A ++   KEAD++ ML A  HLG +N D +M+ Y+F R+ DG ++ NL K W K+  AAR++V I++P +I V + RP  QRA+LKF KYTHA A  GR  PG FTN+M  ++ EPRLL++ DP  D Q I EA+  NIPTI+ C++D+ ++++D+ IP NNK   SIG ++WLLAR VL+++G+I    +WDV  DLF
Sbjct:    6 TSQASKEYQLKEADVKKMLVATTHLGVRNIDRRMQFYIFDRQKDGTFVFNLQKVWAKIVFAARILVTIDDPAEIAVVANRPDAQRAILKFCKYTHATAFPGRFIPGNFTNRMNPNYCEPRLLLVNDPVVDRQAILEASYVNIPTISLCNSDANLKFIDVAIPCNNKTPMSIGLIYWLLAREVLRLKGSISRTEEWDVKPDLF 207          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_STRPU (40S ribosomal protein SA (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 79/129 (61.24%), Postives = 105/129 (81.40%), Query Frame = 1
Query:  322 SARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            S+RPYGQRAVLKF  +T A  +AGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+  NIP IA C++DSP+R+VDI IP NNK  HSIG ++W+L+R VL++RG I     W++MVDL+F+R+
Sbjct:    1 SSRPYGQRAVLKFGAHTGATPVAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNSDSPLRHVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMVDLYFFRD 129          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_SULSO (30S ribosomal protein S2P OS=Sulfolobus solfataricus GN=rps2p PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.051e-40
Identity = 88/203 (43.35%), Postives = 133/203 (65.52%), Query Frame = 1
Query:  115 SQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 705
            S+K A I+++      L+A VH+GT +C   ME +V++ R +G+Y++++ K  E+L++AA+ +   + P DIIV ++RPY  R V KFA+   + A+ GR  PGTFTN   +++ EP++L+++DPRTD Q IKEAA   IP +AF DTD+ + Y+D+ IPANNKG+ S+  L+W LAR +L+ R  I P     V V  F  R
Sbjct:   27 SEKGAIIELLVPVDTYLSAGVHIGTHSCTKYMESFVYRVRAEGLYVLDVRKIDERLRIAAKFLSRYD-PQDIIVVASRPYAYRPVQKFAEVVGSRALVGRIIPGTFTNPYLSTYIEPKVLLVSDPRTDTQAIKEAAKVGIPIVAFADTDAKIDYIDLIIPANNKGRKSLALLYWALARQILRERRVIPPDGDLAVPVSEFEMR 228          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_METS3 (30S ribosomal protein S2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps2p PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.796e-40
Identity = 77/182 (42.31%), Postives = 121/182 (66.48%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            +S+   ++   LAA +H+GT+     ME+Y+F+ R+DG+Y++++ KT E+++  A+++   + P DI+V + R YGQ  V KF + T A  I GR  PGT TN     F EP+++++TDPR+D Q + E+    IP IA CDT++ + +VDI IP NNKG+ +I  ++WLLAR +L+ RGTI
Sbjct:    1 MSELLIELDNYLAAGLHIGTQQKTSDMEKYIFRVRSDGLYVLDIQKTDERIRQIAKLLARYD-PEDILVVATRQYGQAPVKKFGEVTGAKTIPGRFIPGTLTNPTYAKFIEPKIIVVTDPRSDAQAVLESKQNGIPVIALCDTENLLSFVDIAIPVNNKGRKAIALVYWLLARQILRERGTI 181          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_PYRHO (30S ribosomal protein S2P OS=Pyrococcus horikoshii GN=rps2p PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.855e-38
Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   E P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP ++I+TDPR DHQ +KEA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I    ++ + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPEVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPVEEF 195          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_STAMF (30S ribosomal protein S2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.871e-38
Identity = 83/196 (42.35%), Postives = 120/196 (61.22%), Query Frame = 1
Query:   76 KMATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            K A  T T P  + +    ++  LAA VH+GT  C   ME +V++ RNDG+YI+++ K  E++++AA+ +   E P  I   S R YGQ+ V+KF  Y       GR  PGTFTN     + EP +++LTDPR D Q +KEAA   IP ++  DTD+   Y+D+ IPANNKG+ S+  ++WLLAR +L+ RG + P
Sbjct:   11 KSAEKTQTKP--VIELLIPLEKYLAAGVHIGTHICTKFMEPFVYRVRNDGLYILDVRKIDERIRIAAKFLSRYE-PSKIAAVSVRTYGQKPVVKFCNYVGCKPFTGRFMPGTFTNPSLKWYFEPDIVLLTDPRADSQALKEAAEIGIPIVSLADTDNRTEYIDLIIPANNKGRKSLALIYWLLARQILRERGLLPP 203          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_PYRFU (30S ribosomal protein S2P OS=Pyrococcus furiosus GN=rps2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.361e-38
Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   E P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP +LI+TDPR DHQ ++EA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I+    + + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEIQSREDFKIPVEEF 195          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_PYRAB (30S ribosomal protein S2P OS=Pyrococcus abyssi GN=rps2p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 76/188 (40.43%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   + P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP ++I+TDPR DHQ +KEA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I    ++ + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFD-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPVEEF 195          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_PYRKO (30S ribosomal protein S2P OS=Pyrococcus kodakaraensis GN=rps2p PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.417e-37
Identity = 80/191 (41.88%), Postives = 119/191 (62.30%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 705
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   + P  I+  S R YGQR V KF + T A AI GR  PGT TN    +F EP +LI+TDPR DHQ +KEA    IP +A  DT++ + YVDI IP NNKG+ ++  ++W+LAR VL  R  I     + + V+ F  R
Sbjct:    8 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLRVAGKFLAKFD-PESILAVSVRLYGQRPVKKFGEVTGAKAIPGRFLPGTMTNPQVKNFIEPDVLIVTDPRADHQALKEAVEIGIPIVALVDTENFLSYVDIAIPTNNKGRKALALIYWILAREVLYNRKEIESREDFKIPVEDFEMR 197          
The following BLAST results are available for this feature:
BLAST of CK934387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_SCHJA1.276e-5452.8540S ribosomal protein SA OS=Schistosoma japonicum ... [more]
RSSA_GIALA1.666e-5448.5140S ribosomal protein SA OS=Giardia lamblia GN=GL5... [more]
RSSA_STRPU4.548e-4461.2440S ribosomal protein SA (Fragment) OS=Strongyloce... [more]
RS2_SULSO3.051e-4043.3530S ribosomal protein S2P OS=Sulfolobus solfataric... [more]
RS2_METS36.796e-4042.3130S ribosomal protein S2P OS=Methanobrevibacter sm... [more]
RS2_PYRHO2.855e-3840.9630S ribosomal protein S2P OS=Pyrococcus horikoshii... [more]
RS2_STAMF4.871e-3842.3530S ribosomal protein S2P OS=Staphylothermus marin... [more]
RS2_PYRFU6.361e-3840.9630S ribosomal protein S2P OS=Pyrococcus furiosus G... [more]
RS2_PYRAB1.085e-3740.4330S ribosomal protein S2P OS=Pyrococcus abyssi GN=... [more]
RS2_PYRKO1.417e-3741.8830S ribosomal protein S2P OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_F03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934387 ID=CK934387; Name=CK934387; organism=Citrus sinensis; type=EST; length=710bp
GGGATCACAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCT
ACAGGGAGCC
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