CK934387

Overview
NameCK934387
Unique NameCK934387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_METS5 (30S ribosomal protein S2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps2p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 83/202 (41.09%), Postives = 125/202 (61.88%), Query Frame = 1
Query:  109 QLSQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            Q  +K A I+++      L+A VH+GT  C   MER++++ R +G+Y++++ K  E+L++AA+ +   + P  I+  ++RPY    V KFA+   A A+ GR  PG  TN     F EP +L+++DPRTD Q IKEAA   IP +AF DTD+ + YVD+ IP+NNKG+ S+  L+W LAR +L+ R  I P     V V+ F
Sbjct:   19 QRGEKGAIIELLVPLENYLSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFLSRFQ-PQSILAVASRPYAFTPVQKFAEVVGARAVVGRMVPGMLTNPYLEDFIEPEVLLVSDPRTDTQAIKEAADMGIPVVAFSDTDAKVDYVDLVIPSNNKGRKSLALLYWALARQILRERKEIAPDADIPVKVEEF 219          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_THEPD (30S ribosomal protein S2P OS=Thermofilum pendens (strain Hrk 5) GN=rps2p PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.033e-37
Identity = 83/209 (39.71%), Postives = 122/209 (58.37%), Query Frame = 1
Query:   70 EIKMATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            E+K+  G    P         ++M LAA + +GTK     ME +++  R DG+Y++++ KT E++++AA++I   + P   +V S R YG R V KF        + GR  PGTFTN   + F E  L+++TDPR D Q + EA    IP IA CDTDSP+  VD+ IP NN+G+ ++  +FWLLAR VL++RG I P  +  V +  F
Sbjct:    5 ELKLLEGQLLIP---------LEMYLAAGIRIGTKMKSKFMEPFIYSARPDGLYLLDVKKTDERIRIAAKMIARYD-PSKFVVVSGRQYGHRPVRKFCGLVGCKPMLGRVLPGTFTNPALSHFTEADLMMVTDPRVDEQAVVEAGTMGIPVIALCDTDSPISNVDLIIPTNNRGRKALALIFWLLAREVLRIRGDIPPNGELPVPLSDF 203          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_METST (30S ribosomal protein S2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps2p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 74/190 (38.95%), Postives = 120/190 (63.16%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDV 681
            +S+    +   LAA +H+GT+     ME+Y+++ R DG++++++  + +K+ +AA+++   E P DI+V S R YGQ  V KF + T    I GR  PGT TN     F EP++L++TDPR+D Q + EA    IP +A CDT++ +  VD+ IP NNKG+ +I  ++WLLAR +L+ RG +    ++D+
Sbjct:    1 MSELLIPLDKYLAAGLHIGTQQKTKDMEKYIYRVRADGLHVLDVKSSNDKIIVAAKLLSKYE-PDDILVVSTRQYGQSPVKKFGEVTGTKTIPGRFIPGTLTNPQYAKFIEPKILVVTDPRSDSQAVIEAKQNGIPVVALCDTENLLCNVDVVIPVNNKGRKAIALVYWLLARQILRERGILSSDEEFDL 189          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_SULTO (30S ribosomal protein S2P OS=Sulfolobus tokodaii GN=rps2p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.046e-36
Identity = 81/194 (41.75%), Postives = 121/194 (62.37%), Query Frame = 1
Query:  100 APRQLSQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            A  Q S+K A I+++      L+A VH+GT  C   ME++V++ R +G+Y++++ K  E+L++AAR +     P +I+  ++RPY    V KFA+     AI GR  PG  TN    +  EP +++ TDPRTD Q IKEA+   IP +AF DTD+ + +VD  IPANNKG+ S+  L+W+LAR +L+ R  I P
Sbjct:   16 AELQKSEKGAVIELLVPLDTYLSAGVHIGTHTCTKYMEKFVYRVRPEGLYVLDVRKIDERLRIAARFLSRF-TPENILAVTSRPYAFTPVTKFAEVIRGRAIVGRFPPGILTNPQLPNHIEPEVIVATDPRTDLQAIKEASKVGIPVVAFADTDAKVDFVDFIIPANNKGRKSLALLYWVLARQILRERREIPP 208          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_METTH (30S ribosomal protein S2P OS=Methanobacterium thermoautotrophicum GN=rps2p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.673e-36
Identity = 76/190 (40.00%), Postives = 116/190 (61.05%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDV 681
            +S+    +   LAA +H+GT+     ME+Y+++ R+DG+Y++++ KT +++  A++ +   E P DI+  S R YGQ  V KF + T A  I GR  PGT TN     F EP +L+ TDPR+D Q I EA    IP +A CDT++ +  VDI IP NNKG+ +I  ++WLLAR  L+ +G ++     D+
Sbjct:    1 MSELLIPLDKYLAAGLHIGTQQKTADMEKYIYRVRSDGLYVLDIRKTNDRVIAASKFLSKYE-PDDILAVSTRQYGQEPVRKFGEVTGARTIPGRFIPGTLTNPNYAKFIEPEVLVATDPRSDSQAIIEAKQIGIPVVALCDTENLLGNVDIAIPVNNKGRKAIALVYWLLARQFLREKGILKEDEDLDI 189          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_ENTBH (40S ribosomal protein S0 OS=Enterocytozoon bieneusi (strain H348) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.491e-36
Identity = 79/192 (41.15%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  136 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR-GTIRPGHKWDVMVDLFFYRE 708
            +++LA + HLG       M++Y++  R D + + +L KTW+K  +AAR    +    D+ V S + +G++ VLKFA+ T A +  GR  PG+FTN    +  EPRL+I++DP  D Q I+EAA  N PTIAFC+TD  ++YVDI IP NN+   +IG  F++L+R++  ++ GT  P  +    V+LFFYR+
Sbjct:   14 KLLLATQAHLGGVKVTKPMKKYIYGERQDKVSVFDLKKTWDKFILAARAFCGLNYGDDVTVISCKTFGKKPVLKFAETTGAKSYTGRFIPGSFTNTTIRNSCEPRLIIVSDPIVDKQAIEEAAKVNCPTIAFCNTDCDLKYVDIAIPLNNRSPKAIGASFFILSRIIRYIKFGT--PMDQDIKEVELFFYRD 203          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_HYPBU (30S ribosomal protein S2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps2p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 74/175 (42.29%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            ++  L+A VH+GT  C   M ++V++ R DG+YI+++ KT E+L++AA+ +   E P  I+  S R YGQR V KF  Y    AI GR  PGTFTN     + EP ++++TDPR D Q + EAA   IP +A  DTD+ +  +D+ IP NNKG+ S+  ++W+L R +L+ +G I
Sbjct:   23 LERYLSAGVHIGTHICTAYMRKFVYRVRPDGLYILDIRKTDERLRVAAKFLARFE-PSKIVAVSVRQYGQRPVQKFCTYIGCKAITGRILPGTFTNPSLEWYVEPDVIVVTDPRADSQAVDEAARMGIPVVALTDTDNRVENIDLVIPVNNKGRKSLALVYWILTREILREQGKI 196          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_THEAC (30S ribosomal protein S2P OS=Thermoplasma acidophilum GN=rps2p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.016e-35
Identity = 79/180 (43.89%), Postives = 113/180 (62.78%), Query Frame = 1
Query:  157 VHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            VH+GT+     M+ Y+FK RNDG+YI+++ KT  KL +A +++   E P DI+V + R Y  R V KFA+ T A AI GR  PGT TN     + E +++I+TDP  D Q +KEA    IP IA CD ++   +VD+ IP NNKG+ S+  ++WLLAR +L+ RGTI    ++   +D F
Sbjct:   17 VHIGTQVKSSDMKPYIFKIRNDGLYILDVKKTNSKLIVAGKMLARFE-PQDILVVAQRQYAFRPVAKFAEVTGATAITGRFNPGTLTNPSLKFYKEVKVIIVTDPLADVQAMKEAVKIGIPIIALCDANNKTDFVDLIIPTNNKGRRSLAVIYWLLAREILKNRGTITSYDQFKYTIDDF 195          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_SULAC (30S ribosomal protein S2P OS=Sulfolobus acidocaldarius GN=rps2p PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.955e-35
Identity = 73/171 (42.69%), Postives = 113/171 (66.08%), Query Frame = 1
Query:  145 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            L+A VH+GT  C   MER++++ R +G+Y++++ K  E+L++AA+ I     P  ++  ++RPY    V KF++      I+GR  PGT TN    ++ EP +LI+TDPRTD Q IKEA+   IP +AF DTD+ + ++D+ IPANNKG+ S+  L+W+LAR +L+ R  I
Sbjct:   37 LSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFISRFR-PEAVLTVASRPYAFTPVQKFSEVVRGKEISGRFPPGTLTNPYLDNYIEPEVLIVTDPRTDLQAIKEASKVGIPIVAFTDTDARVDFIDVIIPANNKGRKSLALLYWVLARQILRERKEI 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_THEVO (30S ribosomal protein S2P OS=Thermoplasma volcanium GN=rps2p PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 76/180 (42.22%), Postives = 112/180 (62.22%), Query Frame = 1
Query:  157 VHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            VH+GT+     M+ Y+FK RNDG+YI+++ KT  KL  A +++   + P DI+V + R Y  R V KFA+ T A +I GR  PGT TN     + E +++++TDP  D Q +KEA    IP IA CD ++   +VD+ IP NNKG+ S+  ++WLLAR +L+ RGTI    ++   +D F
Sbjct:   17 VHIGTQVKSSDMKPYIFKIRNDGLYILDVKKTNSKLIAAGKMLARFD-PQDILVVAQRQYAFRPVAKFAEVTGAVSITGRFNPGTLTNPSLKFYKEVKVIVVTDPLADVQAMKEAIKIGIPIIALCDANNKTDFVDLVIPTNNKGRRSLAVIYWLLAREILKNRGTITSYDQFKYTIDDF 195          
The following BLAST results are available for this feature:
BLAST of CK934387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_METS52.417e-3741.0930S ribosomal protein S2P OS=Metallosphaera sedula... [more]
RS2_THEPD7.033e-3739.7130S ribosomal protein S2P OS=Thermofilum pendens (... [more]
RS2_METST1.567e-3638.9530S ribosomal protein S2P OS=Methanosphaera stadtm... [more]
RS2_SULTO2.046e-3641.7530S ribosomal protein S2P OS=Sulfolobus tokodaii G... [more]
RS2_METTH2.673e-3640.0030S ribosomal protein S2P OS=Methanobacterium ther... [more]
RSSA_ENTBH3.491e-3641.1540S ribosomal protein S0 OS=Enterocytozoon bieneus... [more]
RS2_HYPBU4.559e-3642.2930S ribosomal protein S2P OS=Hyperthermus butylicu... [more]
RS2_THEAC1.016e-3543.8930S ribosomal protein S2P OS=Thermoplasma acidophi... [more]
RS2_SULAC2.955e-3542.6930S ribosomal protein S2P OS=Sulfolobus acidocalda... [more]
RS2_THEVO1.467e-3442.2230S ribosomal protein S2P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_F03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934387 ID=CK934387; Name=CK934387; organism=Citrus sinensis; type=EST; length=710bp
GGGATCACAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCT
ACAGGGAGCC
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