CK934387

Overview
NameCK934387
Unique NameCK934387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_METKA (30S ribosomal protein S2P OS=Methanopyrus kandleri GN=rps2p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 73/178 (41.01%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  145 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWD 678
            LAA VH+GT+     ME ++++ R DG+++I++ KT E++++AA  + ++ N  +I+V S R YGQ+ V KFA+ T   AI GR  PGT TN     + EP +++LTDPR D Q + EA    IP +A CDTD+    VD+ IP NNKG+ ++  ++WLLAR +L+  G +    +++
Sbjct:   15 LAAGVHIGTQQKTKDMEPFIYRTRADGLHVIDVRKTDERIRIAANFL-SMYNTDEILVVSRRYYGQKPVSKFAEATGTTAIPGRFVPGTLTNPEYDGYLEPEVIVLTDPRADFQALVEAQSVGIPIVALCDTDNFTGNVDLAIPTNNKGRKALALVYWLLARELLKKLGRLEEDEEFE 191          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_IGNH4 (30S ribosomal protein S2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps2p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.267e-34
Identity = 77/178 (43.26%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRN-DGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++M L   VH+GTK     M+R+V+KRRN DG+ I+++ K  +++++AA+ +   E P  I+V S R YG + V  FA++T A  + GR  PGT TN     + EP ++++TD R D Q I EAA   IP +A CDTD+    VD+ IP NNKG+ S+  L+WLL R VL  RG + P
Sbjct:   16 LEMYLQHGVHIGTKMVTNYMKRFVYKRRNIDGLAILDVRKIDQRIRVAAKFLSRFE-PEKIMVVSVRQYGHKPVTMFAQFTGAKPVIGRFVPGTLTNPALEVYYEPDVILVTDTRMDQQAIVEAAEIGIPVVAICDTDNKTENVDLIIPGNNKGRKSLALLYWLLTRQVLVERGQLSP 192          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_METJA (30S ribosomal protein S2P OS=Methanocaldococcus jannaschii GN=rps2p PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 69/184 (37.50%), Postives = 113/184 (61.41%), Query Frame = 1
Query:  112 LSQKE--ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            +S+KE    +   LA+ +H+GT+     ME+++++ R+DG+Y++++ KT E+L++AA+ +   E P DI+  S R Y    + +F KYT    +AGR  PGT TN     F EP ++ ++DPR D Q +KEA    +P +  CDT+    ++D+ IP NNKGK ++  +++LL R  L+ RG I
Sbjct:    1 MSEKELLVPLDTYLASGIHIGTQQKTKDMEKFIYRVRSDGLYVLDVRKTDERLRIAAKFLARYE-PEDILAVSRRIYTMGPLEEFGKYTGIRTVAGRFVPGTLTNPAYKGFMEPEVVFISDPRVDRQALKEATEIGVPIVGLCDTEHLTSFIDLVIPTNNKGKKAVALIYYLLTREYLKNRGVI 183          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_METTP (30S ribosomal protein S2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps2p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.373e-32
Identity = 72/173 (41.62%), Postives = 106/173 (61.27%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            I   LAA VH+GT+     M +Y+++ R DG+Y++++  T +++++A + +   E P  I+V SAR YGQR    FAK   A A  GR  P T TN     + EP +L++TDP  D Q +KEA    IP +A CDT++    VD+ IP NNKG+ ++  ++WLLAR VL+ RG
Sbjct:   19 IDEYLAAGVHIGTQQKTSDMMKYIYRVRTDGLYVLDVQATDKRIRLAGKFLANYE-PSKILVVSARQYGQRPATMFAKAVGARANVGRFIPNTLTNPHFAGYIEPDVLLVTDPAGDGQAVKEAVDIGIPVVALCDTNNMTSNVDLVIPTNNKGRKALTLIYWLLARQVLRERG 190          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_PYRAR (30S ribosomal protein S2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps2p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 73/179 (40.78%), Postives = 107/179 (59.78%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++  L+A V LGT+  +  +E   ++F  R DG+ I ++ K  E+L++AAR I     P  ++V + RPYG + V  F KY    A+ GR  PGT TN     + E  LL + DP+ D Q + EAA   +P IA  DTD+P +Y+D  IP NNKG+ S+  +FW+LAR VL+ RG ++P
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEDRGFIFAVRPDGLRIFDIKKIDERLKIAARFIARYP-PDRVLVHTTRPYGFKPVQMFCKYVGCKALTGRFIPGTLTNPNLPHYQEADLLFVVDPKLDAQAVAEAAKMGVPVIALVDTDTPHQYIDFMIPCNNKGRKSLALIFWILARQVLRERGELKP 190          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_NOSCE (40S ribosomal protein S0 OS=Nosema ceranae (strain BRL01) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 76/193 (39.38%), Postives = 120/193 (62.18%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVF-KRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            ++++L ++ HLG       MERYVF  R+ + I +I++ KTWEK  +AAR+  ++++P D +V S + +G++ VLKF + T A  + GR  PGTF N       EPR+LI++DP  D Q + E +  N+ TIAFC+TD+ + +VDI IP NN+   SI    ++L+R++  M+ T  P  +    V+LF YR+
Sbjct:   13 VKLILISQGHLGGIKTSKLMERYVFGTRKLENIKVIDIEKTWEKFILAARMFCSLKHPSDAVVVSTKTFGRKGVLKFCESTCATPVIGRFIPGTFCNNQVKRPLEPRVLIVSDPFADKQAVIEGSHVNLQTIAFCNTDNDVSFVDIVIPMNNRSPVSISAGLFILSRLIRFMK-TGEPLDENMKEVELFIYRD 204          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_PYRIL (30S ribosomal protein S2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps2p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 72/179 (40.22%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++  L+A V LGT+  +  +E   +++  R DG+ I ++ K  E+L++AA+ I   + P  I+V + RPYG + V  F K+    A+ GR  PGT TN    ++ E  LL + DP+ D Q + EAA   IP IA  DTD+P +Y+D  IP NNKG+ S+  +FW+LAR VL+ RG ++P
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEERGFIYAVRPDGLRIFDIKKIDERLRIAAKFISRYQ-PDRILVHTTRPYGFKPVQMFCKFVGCRALTGRFIPGTLTNPYLPNYTEIDLLFVVDPKLDAQAVAEAAKMGIPIIALVDTDTPHQYIDFMIPCNNKGRRSLALIFWILARQVLRERGELKP 190          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_CALMQ (30S ribosomal protein S2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps2p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 696
            P Q  +    ++  +AA V LG +  N   Q   ++F  R DG+ I NL +  E++++AAR+I     P  ++V S +PY  + +  F K+     + GR  PGT TN   T   +  LL++ DP+TD Q I EA+L  IP IA  DTDS   ++D+ IP NNKG++S+  +FWLLAR VL+ RG ++P     V  + F
Sbjct:    8 PEQGEEYLVPVERYMAAAVRLGARVSNNYLQERGFIFSVRPDGLRIFNLKRIDERIRIAARMITRYP-PSRVMVHSTKPYAFKPIQMFCKFVGCLPVTGRLIPGTLTNPYLTHHIDIDLLMVADPKTDFQAINEASLTGIPVIALVDTDSDPTFIDLMIPCNNKGRNSLALVFWLLARQVLRERGELKPNEDLPVSWEEF 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_THENV (30S ribosomal protein S2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps2p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 69/179 (38.55%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++  L+A V LGT+  +  +E   ++F  R DG+ I ++ K  E+L++AA+ I     P  ++V + RPYG + V  F K+    A+ GR  PGT TN     + E  LL + DP+ D Q + EAA   IP +A  DTD+P +Y+D+ +P NNKG+ S+  +FW+LAR +L+ RG ++P
Sbjct:   12 LEKYLSAGVRLGTRLSNRYLEERGFIFAVRPDGLRIFDIKKIDERLKIAAKFIARYP-PDRVLVHTTRPYGFKPVQMFCKFVGCRALTGRFIPGTLTNPNLPHYQEVDLLFVVDPKLDAQAVTEAAKMGIPVVALVDTDTPHQYIDLMVPCNNKGRKSLALIFWILARQILRERGELKP 189          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RS2_PYRAE (30S ribosomal protein S2P OS=Pyrobaculum aerophilum GN=rps2p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31
Identity = 73/179 (40.78%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++  L+A V LGT+  +  +E   ++F  R DG+ I ++ K  E+L++AA+ I A   P  ++V + RPYG + V  F K+    A+ GR  PGT TN     + E  LL + DP+ D Q + EAA   IP IA  DTD+P +Y+D  IP NNKG+ S+  +FW+LAR VL+ RG ++P
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEDRGFIFAVRPDGLRIFDIKKIDERLKIAAKFI-ARYRPERVLVHTTRPYGFKPVQMFCKFVGCKALTGRFIPGTLTNPNLPHYQEVDLLFVVDPKLDAQAVAEAAKMGIPVIALVDTDTPHQYIDFMIPCNNKGRKSLALIFWILARQVLRERGELKP 190          
The following BLAST results are available for this feature:
BLAST of CK934387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_METKA2.502e-3441.0130S ribosomal protein S2P OS=Methanopyrus kandleri... [more]
RS2_IGNH43.267e-3443.2630S ribosomal protein S2P OS=Ignicoccus hospitalis... [more]
RS2_METJA2.118e-3337.5030S ribosomal protein S2P OS=Methanocaldococcus ja... [more]
RS2_METTP1.373e-3241.6230S ribosomal protein S2P OS=Methanosaeta thermoph... [more]
RS2_PYRAR2.341e-3240.7830S ribosomal protein S2P OS=Pyrobaculum arsenatic... [more]
RSSA_NOSCE3.994e-3239.3840S ribosomal protein S0 OS=Nosema ceranae (strain... [more]
RS2_PYRIL5.216e-3240.2230S ribosomal protein S2P OS=Pyrobaculum islandicu... [more]
RS2_CALMQ6.812e-3238.0030S ribosomal protein S2P OS=Caldivirga maquilinge... [more]
RS2_THENV8.897e-3238.5530S ribosomal protein S2P OS=Thermoproteus neutrop... [more]
RS2_PYRAE1.162e-3140.7830S ribosomal protein S2P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_F03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934387 ID=CK934387; Name=CK934387; organism=Citrus sinensis; type=EST; length=710bp
GGGATCACAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCT
ACAGGGAGCC
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