CK934387

Overview
NameCK934387
Unique NameCK934387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig423 contig Csv1_Contig423:3..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_BOVIN (40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4)

HSP 1 Score: 273.092 bits (697), Expect = 1.039e-72
Identity = 130/199 (65.33%), Postives = 157/199 (78.89%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_DROWI (40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.357e-72
Identity = 133/199 (66.83%), Postives = 157/199 (78.89%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR+
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRSIEWPVVVDLFFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_SOLSE (40S ribosomal protein SA OS=Solea senegalensis GN=rpsa PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.314e-72
Identity = 130/199 (65.33%), Postives = 154/199 (77.39%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L  KE D+   LAA  HLG  N DFQM+ YV+KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H WDVM DL+FYR+
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMDHYVYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLLVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWDVMPDLYFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_SPAAU (40S ribosomal protein SA OS=Sparus aurata GN=rpsa PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.023e-72
Identity = 130/199 (65.33%), Postives = 155/199 (77.89%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L  KE D+   LAA  HLG  N DFQM++YV+KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMDQYVYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_CRIGR (40S ribosomal protein SA OS=Cricetulus griseus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 5.156e-72
Identity = 129/199 (64.82%), Postives = 156/199 (78.39%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR V +MRGTI   H W+VM DL+FYR+
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPWEVMPDLYFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_POSPM (40S ribosomal protein S0 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.734e-72
Identity = 128/203 (63.05%), Postives = 162/203 (79.80%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYRE 708
            P  LS  + +IQ++LAA+ H+G+KNCD QM  YV+KRR DGI+I+N+GKTWEKL  AAR+I AIENP D+ V SARPYG RAVLK+A  T A AIAGR TPG+FTN +  SF EPRL+++TDPR DHQ I+EA+  NIP IAFCDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFYR+
Sbjct:    6 PSVLSATDEEIQLLLAAQAHIGSKNCDKQMLPYVWKRRADGIHILNIGKTWEKLVFAARIIAAIENPNDVCVISARPYGHRAVLKYAANTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRVDHQAIREASYVNIPVIAFCDTDAPLKFVDVAIPTNNKSRHSIGLMWWLLAREVLRLRGTIPRTTDGWNVMVDMFFYRD 208          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_SALSA (40S ribosomal protein SA OS=Salmo salar GN=rpsa PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.149e-71
Identity = 129/199 (64.82%), Postives = 153/199 (76.88%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L  KE D+   LAA  HLG  N DFQME Y +KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+L+R VL+MRGTI   H W+VM DL+FYR+
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNMDFQMEHYTYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIAMCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLSREVLRMRGTISREHPWEVMPDLYFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_URECA (40S ribosomal protein SA OS=Urechis caupo PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.700e-71
Identity = 130/199 (65.33%), Postives = 154/199 (77.39%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L+ KE D+   LA   HLG  N DFQME+YV+KRR DG  IIN+ KTWEK+ +AAR I AIENP DI V SARPYGQRAVLKFA YT A  IAGR TPGTFTNQ+QT+F EPRLL++TDP TDHQP+ EA+  NIP IA  +TDSP++YVDI IP NNK  HS+G ++W+LAR VL++RGTI     W+VMVDLFFYR+
Sbjct:    8 LALKEEDVTKFLACASHLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENPADICVISARPYGQRAVLKFAHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDHQPVTEASYVNIPVIALTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISREVPWEVMVDLFFYRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_CRYNE (40S ribosomal protein S0 OS=Cryptococcus neoformans GN=RPS0 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.445e-71
Identity = 128/206 (62.14%), Postives = 159/206 (77.18%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG----HKWDVMVDLFFYRE 708
            P+ L   E DIQ++LAA+ HLGTKNCD  ME YV+KRR DGI++IN+GKTWEKL +AARV+  IENP D+ V SARPYG RAVLK+  +T A AIAGR TPG+FTN +  SF EPR++I+TDPR DHQ I+EAA  NIP IAFCDTD+  ++VDI IPANNK +HSIG +++LL R VL++RGT+  G      WDV+ DLFFYR+
Sbjct:    7 PKALQATEDDIQLLLAAQCHLGTKNCDKSMENYVWKRRADGIHVINVGKTWEKLVLAARVLATIENPNDVCVISARPYGHRAVLKYGSFTGAQAIAGRFTPGSFTNYITRSFKEPRVIIVTDPRVDHQAIREAAYVNIPVIAFCDTDASTKFVDIAIPANNKSRHSIGLMWYLLCREVLRLRGTVPRGPTGPSGWDVLPDLFFYRD 212          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_TRIGR (40S ribosomal protein SA OS=Tripneustes gratilla PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.270e-70
Identity = 123/199 (61.81%), Postives = 158/199 (79.40%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L+ KE D+Q  LA+  H+G+ N D+QM +YV+KR+ DG YIINL +TWEKL MAAR+IVAIENP D+ V S+RPYGQRAVLKF  +T A  IAGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+  NIP IA C+TDSP+RYVDI IP NNK  HSIG ++W+L+R VL++RG I     W++M DL+F+R+
Sbjct:    8 LALKEDDVQKFLASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENPADVCVISSRPYGQRAVLKFGAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMCDLYFFRD 206          
The following BLAST results are available for this feature:
BLAST of CK934387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_BOVIN1.039e-7265.3340S ribosomal protein SA OS=Bos taurus GN=RPSA PE=... [more]
RSSA_DROWI1.357e-7266.8340S ribosomal protein SA OS=Drosophila willistoni ... [more]
RSSA_SOLSE2.314e-7265.3340S ribosomal protein SA OS=Solea senegalensis GN=... [more]
RSSA_SPAAU3.023e-7265.3340S ribosomal protein SA OS=Sparus aurata GN=rpsa ... [more]
RSSA_CRIGR5.156e-7264.8240S ribosomal protein SA OS=Cricetulus griseus GN=... [more]
RSSA_POSPM6.734e-7263.0540S ribosomal protein S0 OS=Postia placenta (strai... [more]
RSSA_SALSA1.149e-7164.8240S ribosomal protein SA OS=Salmo salar GN=rpsa PE... [more]
RSSA_URECA5.700e-7165.3340S ribosomal protein SA OS=Urechis caupo PE=2 SV=... [more]
RSSA_CRYNE7.445e-7162.1440S ribosomal protein S0 OS=Cryptococcus neoforman... [more]
RSSA_TRIGR1.270e-7061.8140S ribosomal protein SA OS=Tripneustes gratilla P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_F03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934387 ID=CK934387; Name=CK934387; organism=Citrus sinensis; type=EST; length=710bp
GGGATCACAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCT
ACAGGGAGCC
back to top