CK934387

Overview
NameCK934387
Unique NameCK934387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig423 contig Csv1_Contig423:3..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_ASPNC (40S ribosomal protein S0 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps0 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.006e-67
Identity = 127/208 (61.06%), Postives = 158/208 (75.96%), Query Frame = 1
Query:  100 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRE 708
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+      WDV+VDL+FYR+
Sbjct:    2 APSQLPPIFNPTSQDIEMLLAAQCHLGSKNLQSHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLASREVDWDVVVDLYFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_SCLS1 (40S ribosomal protein S0 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps0 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.716e-67
Identity = 127/208 (61.06%), Postives = 157/208 (75.48%), Query Frame = 1
Query:  100 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRE 708
            AP QL    +    DI+ +LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RG+I     +WD MVDL+FYR+
Sbjct:    2 APSQLPAIFNPTSQDIEQLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGSIASREAEWDTMVDLYFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_PODAN (40S ribosomal protein S0 OS=Podospora anserina GN=RPS0 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.716e-67
Identity = 123/206 (59.71%), Postives = 155/206 (75.24%), Query Frame = 1
Query:   94 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYRE 708
            A  P   +    DI+ +LAA+ H+G+KN     + Y++K R DG+ IIN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+HSIG ++W+LAR VL++RGTI      WDVMVDL+FYR+
Sbjct:    4 ANLPSIFNATSQDIEQLLAAQCHIGSKNLGVHAQPYLWKTRADGVNIINIGKTWEKIVLAARIIAAIDNPSDVCVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTIYNREAPWDVMVDLYFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_EMENI (40S ribosomal protein S0 OS=Emericella nidulans GN=rps0 PE=3 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.716e-67
Identity = 126/208 (60.58%), Postives = 158/208 (75.96%), Query Frame = 1
Query:  100 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRE 708
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+      WDV+VDL+FYR+
Sbjct:    2 APSQLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINVGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLANREVDWDVVVDLYFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_PLAKH (40S ribosomal protein SA OS=Plasmodium knowlesi (strain H) GN=PKH_061110 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.242e-67
Identity = 121/205 (59.02%), Postives = 156/205 (76.10%), Query Frame = 1
Query:   94 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            +T  +  S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++I+NL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD QP+KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++GT+     W+VMVD+F +R+
Sbjct:    2 STNKKVQSPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHILNLAKTYEKLQLAARIIVAINNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQPVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGTLPRSKPWNVMVDMFLWRD 206          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_BOTFB (40S ribosomal protein S0 OS=Botryotinia fuckeliana (strain B05.10) GN=rps0 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.242e-67
Identity = 127/208 (61.06%), Postives = 156/208 (75.00%), Query Frame = 1
Query:  100 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRE 708
            AP QL    +    DI+ +LAA+ HLG KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RG+I     +WD MVDL+FYR+
Sbjct:    2 APSQLPAIFNPTSQDIEQLLAAQCHLGAKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGSIASREAEWDTMVDLYFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_CULQU (40S ribosomal protein SA OS=Culex quinquefasciatus GN=CPIJ013899 PE=3 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.928e-67
Identity = 122/199 (61.31%), Postives = 154/199 (77.39%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            L+ K+ D+  MLAA  H+G+ + +FQME YVFKRR DG++IINLG+TWEKL +AAR I +IE PG++   S+R +GQRAVLKFA YT A  IAGR TPG FTNQ+Q +F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP N K  HSIG ++WLLAR VL++RG I    KW++  DLFFYR+
Sbjct:    8 LALKDDDVNKMLAATTHVGSTSVNFQMESYVFKRRPDGVHIINLGRTWEKLLLAARCIASIEYPGEVFAISSRQFGQRAVLKFAHYTEATPIAGRFTPGAFTNQIQPAFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPLKFVDIAIPCNTKSPHSIGLMWWLLAREVLKLRGKI--SDKWELKPDLFFYRD 204          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_PLAYO (40S ribosomal protein SA OS=Plasmodium yoelii yoelii GN=PY06059 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.824e-67
Identity = 122/198 (61.62%), Postives = 152/198 (76.77%), Query Frame = 1
Query:  115 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 708
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++GTI     WDVMVD+F +R+
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGTIPRSQAWDVMVDMFLWRD 205          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_ASPOR (40S ribosomal protein S0 OS=Aspergillus oryzae GN=rps0 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.824e-67
Identity = 124/208 (59.62%), Postives = 158/208 (75.96%), Query Frame = 1
Query:  100 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRE 708
            AP QL    +  + DI+ +LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I A+ENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP +A CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RGT+     +WDV+ DL+FYR+
Sbjct:    2 APSQLPPIFNPTQQDIEQLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAVENPADICVISARPYGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVLALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTLATRETEWDVVPDLYFYRD 209          
BLAST of CK934387 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFN (40S ribosomal protein S0 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps0 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.824e-67
Identity = 124/208 (59.62%), Postives = 158/208 (75.96%), Query Frame = 1
Query:  100 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRE 708
            AP QL    +  + DI+ +LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I A+ENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP +A CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RGT+     +WDV+ DL+FYR+
Sbjct:    2 APSQLPPIFNPTQQDIEQLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAVENPADICVISARPYGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVLALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTLATRETEWDVVPDLYFYRD 209          
The following BLAST results are available for this feature:
BLAST of CK934387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ASPNC1.006e-6761.0640S ribosomal protein S0 OS=Aspergillus niger (str... [more]
RSSA_SCLS11.716e-6761.0640S ribosomal protein S0 OS=Sclerotinia sclerotior... [more]
RSSA_PODAN1.716e-6759.7140S ribosomal protein S0 OS=Podospora anserina GN=... [more]
RSSA_EMENI1.716e-6760.5840S ribosomal protein S0 OS=Emericella nidulans GN... [more]
RSSA_PLAKH2.242e-6759.0240S ribosomal protein SA OS=Plasmodium knowlesi (s... [more]
RSSA_BOTFB2.242e-6761.0640S ribosomal protein S0 OS=Botryotinia fuckeliana... [more]
RSSA_CULQU2.928e-6761.3140S ribosomal protein SA OS=Culex quinquefasciatus... [more]
RSSA_PLAYO3.824e-6761.6240S ribosomal protein SA OS=Plasmodium yoelii yoel... [more]
RSSA_ASPOR3.824e-6759.6240S ribosomal protein S0 OS=Aspergillus oryzae GN=... [more]
RSSA_ASPFN3.824e-6759.6240S ribosomal protein S0 OS=Aspergillus flavus (st... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_F03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934387 ID=CK934387; Name=CK934387; organism=Citrus sinensis; type=EST; length=710bp
GGGATCACAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCT
ACAGGGAGCC
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