CK934390
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 3.247e-67 Identity = 127/161 (78.88%), Postives = 135/161 (83.85%), Query Frame = 1 Query: 115 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 GKAV +APS +EL GR+SMRKT VS SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG SADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSI + L G ++G R Sbjct: 15 GKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYR 174 HSP 2 Score: 130.954 bits (328), Expect = 7.072e-30 Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 L+IWA QV+LMGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+DPE AELKVKE+KNGRLAMFSMFGF Sbjct: 157 LSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGF 226
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 4.241e-67 Identity = 124/164 (75.61%), Postives = 138/164 (84.15%), Query Frame = 1 Query: 109 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG SADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSI + L G ++G R Sbjct: 13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176 HSP 2 Score: 125.946 bits (315), Expect = 2.275e-28 Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGF Sbjct: 159 LAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGF 229
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 5.539e-67 Identity = 124/165 (75.15%), Postives = 139/165 (84.24%), Query Frame = 1 Query: 109 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 F GKAVN+ PS +E++ G+++MRKT +K+ VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG SADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HAQSI + L G ++G R Sbjct: 13 FAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176 HSP 2 Score: 142.124 bits (357), Expect = 3.068e-33 Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGF Sbjct: 159 LAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGF 228
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 6.124e-66 Identity = 122/145 (84.14%), Postives = 128/145 (88.28%), Query Frame = 1 Query: 163 GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 GR+SMRKT SK+VSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG SADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSI + L G ++G R Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYR 155 HSP 2 Score: 140.198 bits (352), Expect = 1.166e-32 Identity = 68/81 (83.95%), Postives = 73/81 (90.12%), Query Frame = 2 Query: 512 GTQA*STPRASLAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 G Q+ ++ LAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGF Sbjct: 127 GNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGF 207
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 2.327e-65 Identity = 125/166 (75.30%), Postives = 135/166 (81.33%), Query Frame = 1 Query: 109 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 F GKAVN+ S R++MRKT +K+ +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAG SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSI + L G ++G R Sbjct: 13 FAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 175 HSP 2 Score: 137.502 bits (345), Expect = 7.556e-32 Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGF Sbjct: 158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGF 227
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 3.969e-65 Identity = 126/166 (75.90%), Postives = 135/166 (81.33%), Query Frame = 1 Query: 109 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 F GKAVN+ S L R++MRKT +K+ SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAG SADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSI + L G ++G R Sbjct: 13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYR 175 HSP 2 Score: 139.428 bits (350), Expect = 1.988e-32 Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGF Sbjct: 158 LAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGF 227
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 8.843e-65 Identity = 123/165 (74.55%), Postives = 135/165 (81.82%), Query Frame = 1 Query: 109 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 F GKAV PS + L R++MRKT +K+ VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAG SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+ + L G ++G R Sbjct: 13 FAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYR 176 HSP 2 Score: 138.272 bits (347), Expect = 4.430e-32 Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGF Sbjct: 159 LAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGF 228
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 5.233e-64 Identity = 82/117 (70.09%), Postives = 98/117 (83.76%), Query Frame = 1 Query: 217 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFGHLGL 561 +YG DR K+LGPFS + P YLTGEFPGDYGWDTAG SADP+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI L + Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAV 149 HSP 2 Score: 95.5153 bits (236), Expect = 5.233e-64 Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 +A A QVVLMG E YR GG G + D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS GF Sbjct: 144 IATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGF 215
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 7.486e-64 Identity = 123/163 (75.46%), Postives = 132/163 (80.98%), Query Frame = 1 Query: 115 GKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 GK + L PS EL R +MRK T K SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG SADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSI + L G ++G R Sbjct: 18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 179 HSP 2 Score: 139.428 bits (350), Expect = 1.988e-32 Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF Sbjct: 162 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 231
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 9.777e-64 Identity = 121/163 (74.23%), Postives = 130/163 (79.75%), Query Frame = 1 Query: 109 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 F GKAV S +E+ R+SMRKT + GSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG SADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSI + L G ++G R Sbjct: 13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 174 HSP 2 Score: 140.969 bits (354), Expect = 6.834e-33 Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGF Sbjct: 157 LAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGF 226 The following BLAST results are available for this feature:
BLAST of CK934390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934390 ID=CK934390; Name=CK934390; organism=Citrus sinensis; type=EST; length=755bpback to top |