CK934390
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 5.745e-56 Identity = 114/163 (69.94%), Postives = 124/163 (76.07%), Query Frame = 1 Query: 130 LAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR*G 591 L P NEL + RI+MR+T + S WYG DR KYLGPFS PSYLTGEFPGDYGWDTA SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSI + L G ++G R G Sbjct: 18 LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVG 178 HSP 2 Score: 126.716 bits (317), Expect = 1.334e-28 Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMG +EGYR+ GG LGE DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGF Sbjct: 159 LAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGF 228
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 5.745e-56 Identity = 109/147 (74.15%), Postives = 122/147 (82.99%), Query Frame = 1 Query: 163 GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR*G 591 GR SMR+T K+V S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAG SADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSI + L G ++G R G Sbjct: 32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVG 176 HSP 2 Score: 132.109 bits (331), Expect = 3.175e-30 Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWA QVVLMG +EGYR+ GGPLGE DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF Sbjct: 157 LAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 7.023e-54 Identity = 105/146 (71.92%), Postives = 117/146 (80.14%), Query Frame = 1 Query: 166 RISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR*G 591 R +MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAG SADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSI + L G ++G R G Sbjct: 34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVG 177 HSP 2 Score: 129.028 bits (323), Expect = 2.687e-29 Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWA QVVLMG VEGYR+ GGPLGE DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGF Sbjct: 158 LAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGF 227
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 7.268e-51 Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 1 Query: 250 PFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 PFSGEPPSYLTGEFPGDYGWDTAG SADPETFAKNRELEVIH WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSI + L G ++G R Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 116 HSP 2 Score: 144.821 bits (364), Expect = 4.733e-34 Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGF Sbjct: 99 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 168
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 5.208e-49 Identity = 102/163 (62.58%), Postives = 118/163 (72.39%), Query Frame = 1 Query: 115 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFGHLG----LPGGLDGSR 585 G+A + +P + + GRI+M WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAG SADPE FA+NR LEVIH RWAMLGALGCVFPE+L + GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSI LG L G ++G R Sbjct: 24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 177 HSP 2 Score: 93.9745 bits (232), Expect = 9.580e-19 Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LA+ QV+LMG VEG+RI G +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGF Sbjct: 160 LAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 230
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 4.409e-48 Identity = 99/164 (60.37%), Postives = 116/164 (70.73%), Query Frame = 1 Query: 109 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFGHLG----LPGGLDGSR 585 F+G+ N P + ++ G ++ S WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAG SADPE FAKNR LEVIH RWAMLGALGC+FPE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSI LG L G ++G R Sbjct: 19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 174 HSP 2 Score: 97.8265 bits (242), Expect = 6.635e-20 Identity = 55/72 (76.39%), Postives = 58/72 (80.56%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNGRLAMFSMFGF Sbjct: 157 LAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGF 227
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.188e-47 Identity = 104/162 (64.20%), Postives = 114/162 (70.37%), Query Frame = 1 Query: 112 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR 585 + K L P + L +M K +KS S S RVKYLGPFSGE PSYLTGEFPGDYGWDTAG SA PETFAKNRELEVIH R AM ALGC+FPELL+ G FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSI + L G ++G R Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDR--RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYR 179 HSP 2 Score: 120.553 bits (301), Expect = 9.558e-27 Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIW +V+LMGAVEGYRIA GPLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGF Sbjct: 162 LAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGF 230
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 8.315e-47 Identity = 94/133 (70.68%), Postives = 105/133 (78.95%), Query Frame = 1 Query: 202 SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFGHLG----LPGGLDGSR 585 S+G WYG DR K+LGPFS P+YLTGEFPGDYGWDTAG SADPETF K RELEVIH RWA+LGALG + PELL+ GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I L L G ++G R Sbjct: 34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR 166 HSP 2 Score: 114.39 bits (285), Expect = 6.850e-25 Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 +A A QVVLMG +EGYR+ GGP GE DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGF Sbjct: 149 VATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGF 218
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 9.848e-37 Identity = 55/116 (47.41%), Postives = 64/116 (55.17%), Query Frame = 1 Query: 190 SKSVSSGSP----WYGLDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 513 SK+VS S WYG DR +L E P YL GE GDYG+D G PE FAK + E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G Sbjct: 49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164 HSP 2 Score: 80.1073 bits (196), Expect = 9.848e-37 Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 2 Query: 563 QVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 +VVL+G E YRI G + D L+PGG FDPLGLA DPE A LKVKEIKNGRLAMF+M GF Sbjct: 178 EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 239
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF Sbjct: 160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229 The following BLAST results are available for this feature:
BLAST of CK934390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934390 ID=CK934390; Name=CK934390; organism=Citrus sinensis; type=EST; length=755bpback to top |