CK934390
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF Sbjct: 160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 229
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF Sbjct: 9 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 78
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF Sbjct: 158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGF Sbjct: 158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGF 227
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.575e-29 Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWACQVVLMG +EGYR+ GGPLGE DPLYPG +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGF Sbjct: 43 LAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGF 112 HSP 2 Score: 85.1149 bits (209), Expect = 4.450e-16 Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 1 Query: 418 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIFG----HLGLPGGLDGSR*G 591 ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSI + L G ++G R G Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVG 62
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26 Identity = 60/71 (84.51%), Postives = 62/71 (87.32%), Query Frame = 2 Query: 545 LAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 LAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPL DPEAFAELKVKEIKNGRLAMFSMFGF Sbjct: 16 LAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGF 86
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.100e-24 Identity = 49/138 (35.51%), Postives = 63/138 (45.65%), Query Frame = 1 Query: 112 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 519 VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D G + PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132 HSP 2 Score: 61.6178 bits (148), Expect = 3.100e-24 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 2 Query: 638 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 YPGG+FDPLG + DP F ELK+KEIKNGRLAM + GF Sbjct: 167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.237e-22 Identity = 38/89 (42.70%), Postives = 46/89 (51.69%), Query Frame = 1 Query: 259 GEP-PSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 519 G+P PSYL G PGD+G+D+ G P + +E E+IHCRWAML G + PE L G W KA GG YLG P Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133 HSP 2 Score: 61.6178 bits (148), Expect = 1.237e-22 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 638 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 YPGG+FDPLG + DP F ELKVKEIKNGRLA+ ++ GF Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGF 206
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.319e-21 Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1 Query: 265 PPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 480 PP +L G PGD+G+D G ++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q Sbjct: 74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ 144 HSP 2 Score: 45.4394 bits (106), Expect = 1.319e-21 Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 2 Query: 551 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFG 751 ++ ++VL+G EG R A P TDP+ YPGG FDPLG P EL+ KEIKNGRLAM ++ G Sbjct: 153 LFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20 Identity = 53/76 (69.74%), Postives = 57/76 (75.00%), Query Frame = 2 Query: 536 RASLAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 ++ LAI A QV+LMGAVEGYR A G GE D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM M GF Sbjct: 9 KSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF 84 The following BLAST results are available for this feature:
BLAST of CK934390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934390 ID=CK934390; Name=CK934390; organism=Citrus sinensis; type=EST; length=755bpback to top |