CK934390

Overview
NameCK934390
Unique NameCK934390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:11..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.381e-20
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1
Query:  187 GSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 480
            GS+SV+  +     DR  +   F G  PP +L G  PGD+G+D  G  +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ 144          

HSP 2 Score: 45.8246 bits (107), Expect = 2.381e-20
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 2
Query:  551 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFG 751
            ++  ++VL+G  EG R A    P    TDP+            YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G
Sbjct:  153 LFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.759e-17
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  265 PPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 468
            PP YLTGE  GD G+D AG +ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          

HSP 2 Score: 39.2762 bits (90), Expect = 4.759e-17
Identity = 33/71 (46.48%), Postives = 37/71 (52.11%), Query Frame = 2
Query:  548 AIWACQVVLMGAVEGYRIAGGPLG---EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 751
            A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +       K  EIKNGRLAM  MFG
Sbjct:  451 AVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFG 512          

HSP 3 Score: 61.6178 bits (148), Expect = 5.619e-14
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  268 PSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 471
            PS+L GE+ GD G+D AG +ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEA 72          

HSP 4 Score: 36.965 bits (84), Expect = 5.619e-14
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 2
Query:  563 QVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754
            +V +  A  G + +A G + E +DP  +YPG  FDPL L  D       K  EIKNGRLA+ ++ GF
Sbjct:   82 EVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGF 140          

HSP 5 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  256 SGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 483
            + EPP+ LTGE+P D G+D    +ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.066e-11
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  542 SLAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754
            S  IW  +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF
Sbjct:  189 STLIWI-EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGF 256          

HSP 2 Score: 37.3502 bits (85), Expect = 1.066e-11
Identity = 44/157 (28.03%), Postives = 56/157 (35.67%), Query Frame = 1
Query:  178 RKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 519
            +K+  K+V++  P +      Y G  S   P +L G   GDYG+D  G     E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG ++    G  YLG P
Sbjct:   44 KKSAKKTVTTDRPLW------YPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAG-KVELVDGSSYLGQP 183          
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.801e-11
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 2
Query:  551 IWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754
            IW  +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F
Sbjct:  193 IWI-EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIF 256          

HSP 2 Score: 38.5058 bits (88), Expect = 1.801e-11
Identity = 25/55 (45.45%), Postives = 28/55 (50.91%), Query Frame = 1
Query:  355 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 519
            RE E+IH RWAMLG LG +  E L   G+      W  AG     EG   YLG P
Sbjct:  138 RECELIHGRWAMLGTLGAIAVEAL--TGI-----AWQDAGKVELVEGS-SYLGQP 184          
The following BLAST results are available for this feature:
BLAST of CK934390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB12_PETHY2.381e-2041.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
LH18_EUGGR4.759e-1750.00Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4A_ARATH1.066e-1147.22Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4C_ARATH1.801e-1145.07Chlorophyll a-b binding protein CP29.3, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934390 ID=CK934390; Name=CK934390; organism=Citrus sinensis; type=EST; length=755bp
GGGGAACCAACAGCTTCTCTTGCTTACACAGCTTCTCTTGCTTACCCAGC
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCC
CATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACAGCCGGGCGTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCTTTGGCC
ATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAAT
TGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCA
GCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTC
AAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGG
NTTCT
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