CK934390
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.381e-20 Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1 Query: 187 GSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 480 GS+SV+ + DR + F G PP +L G PGD+G+D G +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ 144 HSP 2 Score: 45.8246 bits (107), Expect = 2.381e-20 Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 2 Query: 551 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFG 751 ++ ++VL+G EG R A P TDP+ YPGG FDPLG P EL+ KEIKNGRLAM ++ G Sbjct: 153 LFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 4.759e-17 Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1 Query: 265 PPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 468 PP YLTGE GD G+D AG +ADP TF + + EV HCR +ML +GC+ PELL G WF+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440 HSP 2 Score: 39.2762 bits (90), Expect = 4.759e-17 Identity = 33/71 (46.48%), Postives = 37/71 (52.11%), Query Frame = 2 Query: 548 AIWACQVVLMGAVEGYRIAGGPLG---EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 751 A+ A QVV +E +R GG L E D YPG FDPL L + K EIKNGRLAM MFG Sbjct: 451 AVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFG 512 HSP 3 Score: 61.6178 bits (148), Expect = 5.619e-14 Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 Query: 268 PSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 471 PS+L GE+ GD G+D AG +ADP+TF + R EV H R AML +G + P+ L G+ +W++A Sbjct: 12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEA 72 HSP 4 Score: 36.965 bits (84), Expect = 5.619e-14 Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 2 Query: 563 QVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 +V + A G + +A G + E +DP +YPG FDPL L D K EIKNGRLA+ ++ GF Sbjct: 82 EVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGF 140 HSP 5 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 256 SGEPPSYLTGEFPGDYGWDTAGRSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 483 + EPP+ LTGE+P D G+D +ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.066e-11 Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2 Query: 542 SLAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 S IW +V+++G +E R A + LYPGG F DPLGLA DPE A+L++ EIK+ RLAM + GF Sbjct: 189 STLIWI-EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGF 256 HSP 2 Score: 37.3502 bits (85), Expect = 1.066e-11 Identity = 44/157 (28.03%), Postives = 56/157 (35.67%), Query Frame = 1 Query: 178 RKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGRSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 519 +K+ K+V++ P + Y G S P +L G GDYG+D G E AKN RE E+IH RWAML LG + E L GV W AG ++ G YLG P Sbjct: 44 KKSAKKTVTTDRPLW------YPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAG-KVELVDGSSYLGQP 183
BLAST of CK934390 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.801e-11 Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 2 Query: 551 IWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 754 IW +V+++G +E R DP +YPGG FDPLGLA DPE LK+ EIK+ RLAM + F Sbjct: 193 IWI-EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIF 256 HSP 2 Score: 38.5058 bits (88), Expect = 1.801e-11 Identity = 25/55 (45.45%), Postives = 28/55 (50.91%), Query Frame = 1 Query: 355 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 519 RE E+IH RWAMLG LG + E L G+ W AG EG YLG P Sbjct: 138 RECELIHGRWAMLGTLGAIAVEAL--TGI-----AWQDAGKVELVEGS-SYLGQP 184 The following BLAST results are available for this feature:
BLAST of CK934390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934390 ID=CK934390; Name=CK934390; organism=Citrus sinensis; type=EST; length=755bpback to top |