CK934393
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 414.846 bits (1065), Expect = 2.834e-115 Identity = 203/240 (84.58%), Postives = 218/240 (90.83%), Query Frame = 3 Query: 111 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 F GKAVNL+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTA LSADPETFA+NRELEVIH RWAMLGALG VFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPV Sbjct: 13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 252
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 414.075 bits (1063), Expect = 4.834e-115 Identity = 203/241 (84.23%), Postives = 218/241 (90.46%), Query Frame = 3 Query: 129 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 ++ P N+L G R++MRK TG KSV++ SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALG VFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPV Sbjct: 23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 263
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 412.535 bits (1059), Expect = 1.406e-114 Identity = 202/240 (84.17%), Postives = 217/240 (90.42%), Query Frame = 3 Query: 111 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTA LSADPETFA+NRELEVIH RWAMLGALG VFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPV Sbjct: 13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 252
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 411.764 bits (1057), Expect = 2.399e-114 Identity = 201/241 (83.40%), Postives = 218/241 (90.46%), Query Frame = 3 Query: 129 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 ++ P N+L G R++MRK TG KSV++ SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALG VFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPV Sbjct: 23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 263
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 406.371 bits (1043), Expect = 1.008e-112 Identity = 205/236 (86.86%), Postives = 213/236 (90.25%), Query Frame = 3 Query: 117 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 G+A+ LAPS EL G R+SMRKT K+VSSGSPWYGPDRVKYLGP SGE PSYLTGEF G LSADPETFAKNRELEVIH RWAMLGALG VFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV Sbjct: 15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 241
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 395.201 bits (1014), Expect = 2.324e-109 Identity = 191/213 (89.67%), Postives = 198/213 (92.96%), Query Frame = 3 Query: 186 TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 T K SS SPW+GPD VKYLGP SGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALG VFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPV Sbjct: 1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPV 213
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 6.760e-109 Identity = 188/219 (85.84%), Postives = 202/219 (92.24%), Query Frame = 3 Query: 168 RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 R++MR+T SKS S + WYG DR K+LGP SGE PSYL GEF GDYGWDTA LS+DPETFA+NRELEVIH RWAMLGALG + PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV Sbjct: 35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 393.275 bits (1009), Expect = 8.829e-109 Identity = 188/221 (85.07%), Postives = 203/221 (91.86%), Query Frame = 3 Query: 162 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 GGR+SMR+T + +S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALG VFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR+ GGPLGE DP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV Sbjct: 32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 390.193 bits (1001), Expect = 7.475e-108 Identity = 191/230 (83.04%), Postives = 204/230 (88.70%), Query Frame = 3 Query: 147 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 821 NELS R+ M SK+ SGS WYG DR YLGP SG PPSYL+GEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALG V PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP Sbjct: 21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249
BLAST of CK934393 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 388.652 bits (997), Expect = 2.175e-107 Identity = 189/222 (85.14%), Postives = 197/222 (88.74%), Query Frame = 3 Query: 165 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTARLSADPETFAKNRELEVIHCRWAMLGALGRVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 824 GRI+MRKT +K SGSPWYG DRV YLGPLSG PPSYLTGEFPGDYGWDT LSADPETFAKNRELEVIHCRWA+ LG VFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVLMGAVEGY +AGG LGEV DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPV Sbjct: 28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPV 249 The following BLAST results are available for this feature:
BLAST of CK934393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934393 ID=CK934393; Name=CK934393; organism=Citrus sinensis; type=EST; length=825bpback to top |