CK934395

Overview
NameCK934395
Unique NameCK934395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4574 contig Csv1_Contig4574:526..1249. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_COFAR (DNA-directed RNA polymerase subunit beta OS=Coffea arabica GN=rpoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN GM+TIPG NQIQFEGFCRFIDQGL EELYKFPKIEDTD
Sbjct:    1 MLGDGNEGMATIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_POPTR (DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa GN=rpoB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN GMSTIPG NQIQFEGFCRFIDQGL EELYKFPKIED D
Sbjct:    1 MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_POPAL (DNA-directed RNA polymerase subunit beta OS=Populus alba GN=rpoB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN GMSTIPG NQIQFEGFCRFIDQGL EELYKFPKIED D
Sbjct:    1 MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_DAUCA (DNA-directed RNA polymerase subunit beta OS=Daucus carota GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DGN GMSTIPG NQIQFEGFCRF+DQGLTEELYKFPKIEDTD
Sbjct:    1 MLRDGNEGMSTIPGFNQIQFEGFCRFMDQGLTEELYKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CHLSC (DNA-directed RNA polymerase subunit beta OS=Chloranthus spicatus GN=rpoB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DGN GMSTIPG NQIQFEGFCRFIDQGLTEEL+KFPKIEDTD
Sbjct:    1 MLRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELHKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PLAOC (DNA-directed RNA polymerase subunit beta OS=Platanus occidentalis GN=rpoB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            M  DGN GMSTIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MRRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LOTJA (DNA-directed RNA polymerase subunit beta OS=Lotus japonicus GN=rpoB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLG GN GMST+PGLNQIQFEGFCRFID+GLTEEL+KFPKIEDTD
Sbjct:    1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LIRTU (DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera GN=rpoB PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DGN GMSTIPG +QIQFEGFCRFIDQGLTEEL+KFPKIEDTD
Sbjct:    1 MLRDGNEGMSTIPGFSQIQFEGFCRFIDQGLTEELHKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_VITVI (DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            M   GN GMSTIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MFRGGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max GN=rpoB PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN GMST+PGLNQIQFEGFCRFID+GL E L+KFPKIEDTD
Sbjct:    1 MLGDGNEGMSTLPGLNQIQFEGFCRFIDRGLPEGLFKFPKIEDTD 45          
The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RPOB_COFAR7.459e-1891.11DNA-directed RNA polymerase subunit beta OS=Coffea... [more]
RPOB_POPTR1.272e-1791.11DNA-directed RNA polymerase subunit beta OS=Populu... [more]
RPOB_POPAL1.272e-1791.11DNA-directed RNA polymerase subunit beta OS=Populu... [more]
RPOB_DAUCA1.662e-1791.11DNA-directed RNA polymerase subunit beta OS=Daucus... [more]
RPOB_CHLSC2.834e-1791.11DNA-directed RNA polymerase subunit beta OS=Chlora... [more]
RPOB_PLAOC3.702e-1791.11DNA-directed RNA polymerase subunit beta OS=Platan... [more]
RPOB_LOTJA4.835e-1788.89DNA-directed RNA polymerase subunit beta OS=Lotus ... [more]
RPOB_LIRTU1.077e-1688.89DNA-directed RNA polymerase subunit beta OS=Liriod... [more]
RPOB_VITVI1.407e-1688.89DNA-directed RNA polymerase subunit beta OS=Vitis ... [more]
RPOB_SOYBN1.407e-1686.67DNA-directed RNA polymerase subunit beta OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bp
GGGTGCAATAAAGGGGGGCGATGTATATATAGATAGCTATATCGGCACGG
GTTTACTAAATACAAGCCGTCTTACGCACTTCAATCCTATTCTAAAAATT
CGACTAAAAAAATAAAAAGGGGGTTCTTCGCAAATCATTTTTTGAACAGT
GGAATCCACGAAAAAGGTAAGTGCTAAAAAAATGAGCTTTACGCTGGTAT
ATTGTGTCTGATTCTTATGTCTTTATCTTAGCGAATAGATCAAATCACGA
CGTTTATTTTTCTGGTATCCTAACGGATTGGAATATCATAATAATGGTAT
AAATTGAATTATTTTTTTGATTCTATACAAAACTCCGTAAGTCTAAGTGG
AATTTATCGCTTCCTTTCCATTTGGATCTGTCTCTTAGAAATTCCAATTT
TATTAAGTATAAAATCATCCTTTTTCCCCCGTTCATACGTATTTCATACA
TTCCATCTATATGGAGTTGGGTAAAATTTCATGCGATTCAGTAAACAGAA
TCTAAATTCCAGCATTCTGCATCGAATCATATGAATCGATGCAGAATGAG
AAACGAATGGGATTTTTTGATAAATGGGAAATTCAAAATGCTCGGAGATG
GAAATGCAGGAATGTCTACAATACCTGGGTTGAATCAGATACAATTTGAA
GGATTTTGTAGGTTCATTGATCAGGGCTTAACAGAAGAGCTTTATAAGTT
TCCAAAAATTGAAGATACAGATTA
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