CK934395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_COFAR (DNA-directed RNA polymerase subunit beta OS=Coffea arabica GN=rpoB PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18 Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGDGN GM+TIPG NQIQFEGFCRFIDQGL EELYKFPKIEDTD Sbjct: 1 MLGDGNEGMATIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_POPTR (DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa GN=rpoB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17 Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGDGN GMSTIPG NQIQFEGFCRFIDQGL EELYKFPKIED D Sbjct: 1 MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_POPAL (DNA-directed RNA polymerase subunit beta OS=Populus alba GN=rpoB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17 Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGDGN GMSTIPG NQIQFEGFCRFIDQGL EELYKFPKIED D Sbjct: 1 MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_DAUCA (DNA-directed RNA polymerase subunit beta OS=Daucus carota GN=rpoB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17 Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DGN GMSTIPG NQIQFEGFCRF+DQGLTEELYKFPKIEDTD Sbjct: 1 MLRDGNEGMSTIPGFNQIQFEGFCRFMDQGLTEELYKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CHLSC (DNA-directed RNA polymerase subunit beta OS=Chloranthus spicatus GN=rpoB PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17 Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DGN GMSTIPG NQIQFEGFCRFIDQGLTEEL+KFPKIEDTD Sbjct: 1 MLRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELHKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PLAOC (DNA-directed RNA polymerase subunit beta OS=Platanus occidentalis GN=rpoB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17 Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 M DGN GMSTIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD Sbjct: 1 MRRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LOTJA (DNA-directed RNA polymerase subunit beta OS=Lotus japonicus GN=rpoB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17 Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLG GN GMST+PGLNQIQFEGFCRFID+GLTEEL+KFPKIEDTD Sbjct: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LIRTU (DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera GN=rpoB PE=3 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16 Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DGN GMSTIPG +QIQFEGFCRFIDQGLTEEL+KFPKIEDTD Sbjct: 1 MLRDGNEGMSTIPGFSQIQFEGFCRFIDQGLTEELHKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_VITVI (DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16 Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 M GN GMSTIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD Sbjct: 1 MFRGGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max GN=rpoB PE=3 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16 Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGDGN GMST+PGLNQIQFEGFCRFID+GL E L+KFPKIEDTD Sbjct: 1 MLGDGNEGMSTLPGLNQIQFEGFCRFIDRGLPEGLFKFPKIEDTD 45 The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bpback to top |