CK934395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ACOAM (DNA-directed RNA polymerase subunit beta OS=Acorus americanus GN=rpoB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16 Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 564 FLINGKFKMLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 F IN K KM DGN GM TIPG +QIQFEGFCRFIDQGL EE +KFPKIEDTD Sbjct: 5 FSINRKLKMPRDGNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTD 57
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PANGI (DNA-directed RNA polymerase subunit beta OS=Panax ginseng GN=rpoB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16 Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 3 Query: 588 MLGDG-NAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DG N GMSTIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD Sbjct: 1 MLRDGKNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 46
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_OENEH (DNA-directed RNA polymerase subunit beta OS=Oenothera elata subsp. hookeri GN=rpoB PE=3 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16 Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIED 716 MLGDGN GM TIPG NQIQFEGFCRFIDQGLTEEL KFPKIED Sbjct: 1 MLGDGNGGMCTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIED 43
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_AMBTC (DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda GN=rpoB PE=3 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16 Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DGN GMSTIPG +QIQFEGFCRF+DQGL EEL+KFPKIEDTD Sbjct: 1 MLRDGNEGMSTIPGFSQIQFEGFCRFVDQGLAEELHKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_MORIN (DNA-directed RNA polymerase subunit beta OS=Morus indica GN=rpoB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15 Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML GN +STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD Sbjct: 1 MLEGGNEEISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CERDE (DNA-directed RNA polymerase subunit beta OS=Ceratophyllum demersum GN=rpoB PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15 Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML D N GMSTIPG +QIQFEGFCRF+DQGLTEEL+KFPKIEDTD Sbjct: 1 MLRDRNEGMSTIPGFSQIQFEGFCRFLDQGLTEELHKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_GOSHI (DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum GN=rpoB PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15 Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGD N MSTIPGLNQIQFEGFC F+D+GLTEELYKFPKIEDT+ Sbjct: 1 MLGDENGEMSTIPGLNQIQFEGFCGFMDRGLTEELYKFPKIEDTE 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_GOSBA (DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense GN=rpoB PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15 Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGD N MSTIPGLNQIQFEGFC F+D+GLTEELYKFPKIEDT+ Sbjct: 1 MLGDENGEMSTIPGLNQIQFEGFCGFMDRGLTEELYKFPKIEDTE 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_BUXMI (DNA-directed RNA polymerase subunit beta OS=Buxus microphylla GN=rpoB PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15 Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 M+ DGN MSTIPG +QIQFEGFCRFIDQGL EELYKFPKIEDTD Sbjct: 1 MIRDGNEEMSTIPGFSQIQFEGFCRFIDQGLMEELYKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CUSEX (DNA-directed RNA polymerase subunit beta OS=Cuscuta exaltata GN=rpoB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15 Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DG G++TIPGLNQIQFEGFCRFIDQGLTEELYKF KIED D Sbjct: 1 MLEDGKGGITTIPGLNQIQFEGFCRFIDQGLTEELYKFQKIEDID 45 The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bpback to top |