CK934395

Overview
NameCK934395
Unique NameCK934395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4574 contig Csv1_Contig4574:526..1249. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ACOAM (DNA-directed RNA polymerase subunit beta OS=Acorus americanus GN=rpoB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 3
Query:  564 FLINGKFKMLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            F IN K KM  DGN GM TIPG +QIQFEGFCRFIDQGL EE +KFPKIEDTD
Sbjct:    5 FSINRKLKMPRDGNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTD 57          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PANGI (DNA-directed RNA polymerase subunit beta OS=Panax ginseng GN=rpoB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 3
Query:  588 MLGDG-NAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DG N GMSTIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLRDGKNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 46          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_OENEH (DNA-directed RNA polymerase subunit beta OS=Oenothera elata subsp. hookeri GN=rpoB PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIED 716
            MLGDGN GM TIPG NQIQFEGFCRFIDQGLTEEL KFPKIED
Sbjct:    1 MLGDGNGGMCTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIED 43          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_AMBTC (DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda GN=rpoB PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DGN GMSTIPG +QIQFEGFCRF+DQGL EEL+KFPKIEDTD
Sbjct:    1 MLRDGNEGMSTIPGFSQIQFEGFCRFVDQGLAEELHKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_MORIN (DNA-directed RNA polymerase subunit beta OS=Morus indica GN=rpoB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML  GN  +STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLEGGNEEISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CERDE (DNA-directed RNA polymerase subunit beta OS=Ceratophyllum demersum GN=rpoB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML D N GMSTIPG +QIQFEGFCRF+DQGLTEEL+KFPKIEDTD
Sbjct:    1 MLRDRNEGMSTIPGFSQIQFEGFCRFLDQGLTEELHKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_GOSHI (DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum GN=rpoB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGD N  MSTIPGLNQIQFEGFC F+D+GLTEELYKFPKIEDT+
Sbjct:    1 MLGDENGEMSTIPGLNQIQFEGFCGFMDRGLTEELYKFPKIEDTE 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_GOSBA (DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense GN=rpoB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGD N  MSTIPGLNQIQFEGFC F+D+GLTEELYKFPKIEDT+
Sbjct:    1 MLGDENGEMSTIPGLNQIQFEGFCGFMDRGLTEELYKFPKIEDTE 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_BUXMI (DNA-directed RNA polymerase subunit beta OS=Buxus microphylla GN=rpoB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            M+ DGN  MSTIPG +QIQFEGFCRFIDQGL EELYKFPKIEDTD
Sbjct:    1 MIRDGNEEMSTIPGFSQIQFEGFCRFIDQGLMEELYKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CUSEX (DNA-directed RNA polymerase subunit beta OS=Cuscuta exaltata GN=rpoB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DG  G++TIPGLNQIQFEGFCRFIDQGLTEELYKF KIED D
Sbjct:    1 MLEDGKGGITTIPGLNQIQFEGFCRFIDQGLTEELYKFQKIEDID 45          
The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RPOB_ACOAM1.407e-1677.36DNA-directed RNA polymerase subunit beta OS=Acorus... [more]
RPOB_PANGI1.837e-1691.30DNA-directed RNA polymerase subunit beta OS=Panax ... [more]
RPOB_OENEH5.346e-1690.70DNA-directed RNA polymerase subunit beta OS=Oenoth... [more]
RPOB_AMBTC5.346e-1684.44DNA-directed RNA polymerase subunit beta OS=Ambore... [more]
RPOB_MORIN1.191e-1586.67DNA-directed RNA polymerase subunit beta OS=Morus ... [more]
RPOB_CERDE1.555e-1584.44DNA-directed RNA polymerase subunit beta OS=Cerato... [more]
RPOB_GOSHI2.031e-1584.44DNA-directed RNA polymerase subunit beta OS=Gossyp... [more]
RPOB_GOSBA2.031e-1584.44DNA-directed RNA polymerase subunit beta OS=Gossyp... [more]
RPOB_BUXMI2.031e-1584.44DNA-directed RNA polymerase subunit beta OS=Buxus ... [more]
RPOB_CUSEX2.653e-1584.44DNA-directed RNA polymerase subunit beta OS=Cuscut... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bp
GGGTGCAATAAAGGGGGGCGATGTATATATAGATAGCTATATCGGCACGG
GTTTACTAAATACAAGCCGTCTTACGCACTTCAATCCTATTCTAAAAATT
CGACTAAAAAAATAAAAAGGGGGTTCTTCGCAAATCATTTTTTGAACAGT
GGAATCCACGAAAAAGGTAAGTGCTAAAAAAATGAGCTTTACGCTGGTAT
ATTGTGTCTGATTCTTATGTCTTTATCTTAGCGAATAGATCAAATCACGA
CGTTTATTTTTCTGGTATCCTAACGGATTGGAATATCATAATAATGGTAT
AAATTGAATTATTTTTTTGATTCTATACAAAACTCCGTAAGTCTAAGTGG
AATTTATCGCTTCCTTTCCATTTGGATCTGTCTCTTAGAAATTCCAATTT
TATTAAGTATAAAATCATCCTTTTTCCCCCGTTCATACGTATTTCATACA
TTCCATCTATATGGAGTTGGGTAAAATTTCATGCGATTCAGTAAACAGAA
TCTAAATTCCAGCATTCTGCATCGAATCATATGAATCGATGCAGAATGAG
AAACGAATGGGATTTTTTGATAAATGGGAAATTCAAAATGCTCGGAGATG
GAAATGCAGGAATGTCTACAATACCTGGGTTGAATCAGATACAATTTGAA
GGATTTTGTAGGTTCATTGATCAGGGCTTAACAGAAGAGCTTTATAAGTT
TCCAAAAATTGAAGATACAGATTA
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