CK934395

Overview
NameCK934395
Unique NameCK934395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SPIOL (DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea GN=rpoB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DGN GMSTIPG NQIQFEGF RFIDQGLTEEL KFPK+EDTD
Sbjct:    1 MLRDGNEGMSTIPGFNQIQFEGFWRFIDQGLTEELSKFPKMEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ILLOL (DNA-directed RNA polymerase subunit beta OS=Illicium oligandrum GN=rpoB PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DGN GMSTIPG +QIQFEGFC+FIDQGL EEL+KFPK+EDTD
Sbjct:    1 MLRDGNEGMSTIPGSSQIQFEGFCKFIDQGLAEELHKFPKMEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SILLA (DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN  MSTIPG NQIQFEGFC+FIDQGL EELYKFPKIEDTD
Sbjct:    1 MLREGNELMSTIPGFNQIQFEGFCQFIDQGLPEELYKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_DIOEL (DNA-directed RNA polymerase subunit beta OS=Dioscorea elephantipes GN=rpoB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            M+ DGN GM TIPG NQIQFEGFCRFI+QGL EEL+KFPKIEDTD
Sbjct:    1 MIRDGNEGMYTIPGFNQIQFEGFCRFINQGLMEELHKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PHAVU (DNA-directed RNA polymerase subunit beta OS=Phaseolus vulgaris GN=rpoB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLG GN  MST+PGLNQIQ EGFCRFID+GLTE L+KFPKIEDTD
Sbjct:    1 MLGSGNEEMSTLPGLNQIQLEGFCRFIDRGLTEGLFKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SINAL (DNA-directed RNA polymerase subunit beta OS=Sinapis alba GN=rpoB PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  567 LINGKFKMLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            +IN K KMLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MINAK-KMLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 51          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_DRIGR (DNA-directed RNA polymerase subunit beta OS=Drimys granadensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DGN GM TIPG +QIQFEGF RFIDQGLTEEL+KFPKIEDTD
Sbjct:    1 MLRDGNEGMFTIPGFSQIQFEGFFRFIDQGLTEELHKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=rpoB PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14
Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLG GN  MSTIP  NQIQFEGFCRFID GLTEEL KFPKIEDTD
Sbjct:    1 MLGGGNERMSTIPAFNQIQFEGFCRFIDHGLTEELSKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_NANDO (DNA-directed RNA polymerase subunit beta OS=Nandina domestica GN=rpoB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML D N GMSTIPG +QIQFEGFCRFID+GL EEL KFPKIEDTD
Sbjct:    1 MLRDANEGMSTIPGFSQIQFEGFCRFIDRGLMEELNKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ACOCL (DNA-directed RNA polymerase subunit beta OS=Acorus calamus GN=rpoB PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.003e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  597 DGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            DGN GM TIPG +QIQFEGFCRFIDQGL EE +KFPKIEDTD
Sbjct:    4 DGNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTD 45          
The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RPOB_SPIOL3.465e-1586.67DNA-directed RNA polymerase subunit beta OS=Spinac... [more]
RPOB_ILLOL3.465e-1582.22DNA-directed RNA polymerase subunit beta OS=Illici... [more]
RPOB_SILLA4.525e-1584.44DNA-directed RNA polymerase subunit beta OS=Silene... [more]
RPOB_DIOEL4.525e-1582.22DNA-directed RNA polymerase subunit beta OS=Diosco... [more]
RPOB_PHAVU5.910e-1582.22DNA-directed RNA polymerase subunit beta OS=Phaseo... [more]
RPOB_SINAL7.719e-1578.85DNA-directed RNA polymerase subunit beta OS=Sinapi... [more]
RPOB_DRIGR1.008e-1484.44DNA-directed RNA polymerase subunit beta OS=Drimys... [more]
RPOB_CUCSA1.008e-1484.44DNA-directed RNA polymerase subunit beta OS=Cucumi... [more]
RPOB_NANDO2.246e-1482.22DNA-directed RNA polymerase subunit beta OS=Nandin... [more]
RPOB_ACOCL5.003e-1483.33DNA-directed RNA polymerase subunit beta OS=Acorus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bp
GGGTGCAATAAAGGGGGGCGATGTATATATAGATAGCTATATCGGCACGG
GTTTACTAAATACAAGCCGTCTTACGCACTTCAATCCTATTCTAAAAATT
CGACTAAAAAAATAAAAAGGGGGTTCTTCGCAAATCATTTTTTGAACAGT
GGAATCCACGAAAAAGGTAAGTGCTAAAAAAATGAGCTTTACGCTGGTAT
ATTGTGTCTGATTCTTATGTCTTTATCTTAGCGAATAGATCAAATCACGA
CGTTTATTTTTCTGGTATCCTAACGGATTGGAATATCATAATAATGGTAT
AAATTGAATTATTTTTTTGATTCTATACAAAACTCCGTAAGTCTAAGTGG
AATTTATCGCTTCCTTTCCATTTGGATCTGTCTCTTAGAAATTCCAATTT
TATTAAGTATAAAATCATCCTTTTTCCCCCGTTCATACGTATTTCATACA
TTCCATCTATATGGAGTTGGGTAAAATTTCATGCGATTCAGTAAACAGAA
TCTAAATTCCAGCATTCTGCATCGAATCATATGAATCGATGCAGAATGAG
AAACGAATGGGATTTTTTGATAAATGGGAAATTCAAAATGCTCGGAGATG
GAAATGCAGGAATGTCTACAATACCTGGGTTGAATCAGATACAATTTGAA
GGATTTTGTAGGTTCATTGATCAGGGCTTAACAGAAGAGCTTTATAAGTT
TCCAAAAATTGAAGATACAGATTA
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