CK934395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SPIOL (DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea GN=rpoB PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15 Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DGN GMSTIPG NQIQFEGF RFIDQGLTEEL KFPK+EDTD Sbjct: 1 MLRDGNEGMSTIPGFNQIQFEGFWRFIDQGLTEELSKFPKMEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ILLOL (DNA-directed RNA polymerase subunit beta OS=Illicium oligandrum GN=rpoB PE=3 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15 Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DGN GMSTIPG +QIQFEGFC+FIDQGL EEL+KFPK+EDTD Sbjct: 1 MLRDGNEGMSTIPGSSQIQFEGFCKFIDQGLAEELHKFPKMEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SILLA (DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15 Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML +GN MSTIPG NQIQFEGFC+FIDQGL EELYKFPKIEDTD Sbjct: 1 MLREGNELMSTIPGFNQIQFEGFCQFIDQGLPEELYKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_DIOEL (DNA-directed RNA polymerase subunit beta OS=Dioscorea elephantipes GN=rpoB PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15 Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 M+ DGN GM TIPG NQIQFEGFCRFI+QGL EEL+KFPKIEDTD Sbjct: 1 MIRDGNEGMYTIPGFNQIQFEGFCRFINQGLMEELHKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PHAVU (DNA-directed RNA polymerase subunit beta OS=Phaseolus vulgaris GN=rpoB PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15 Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLG GN MST+PGLNQIQ EGFCRFID+GLTE L+KFPKIEDTD Sbjct: 1 MLGSGNEEMSTLPGLNQIQLEGFCRFIDRGLTEGLFKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SINAL (DNA-directed RNA polymerase subunit beta OS=Sinapis alba GN=rpoB PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15 Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 3 Query: 567 LINGKFKMLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 +IN K KMLGDG G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D Sbjct: 1 MINAK-KMLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 51
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_DRIGR (DNA-directed RNA polymerase subunit beta OS=Drimys granadensis GN=rpoB PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14 Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DGN GM TIPG +QIQFEGF RFIDQGLTEEL+KFPKIEDTD Sbjct: 1 MLRDGNEGMFTIPGFSQIQFEGFFRFIDQGLTEELHKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=rpoB PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14 Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLG GN MSTIP NQIQFEGFCRFID GLTEEL KFPKIEDTD Sbjct: 1 MLGGGNERMSTIPAFNQIQFEGFCRFIDHGLTEELSKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_NANDO (DNA-directed RNA polymerase subunit beta OS=Nandina domestica GN=rpoB PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14 Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML D N GMSTIPG +QIQFEGFCRFID+GL EEL KFPKIEDTD Sbjct: 1 MLRDANEGMSTIPGFSQIQFEGFCRFIDRGLMEELNKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ACOCL (DNA-directed RNA polymerase subunit beta OS=Acorus calamus GN=rpoB PE=3 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 5.003e-14 Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 3 Query: 597 DGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 DGN GM TIPG +QIQFEGFCRFIDQGL EE +KFPKIEDTD Sbjct: 4 DGNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTD 45 The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bpback to top |