CK934395

Overview
NameCK934395
Unique NameCK934395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4574 contig Csv1_Contig4574:526..1249. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ACOGR (DNA-directed RNA polymerase subunit beta OS=Acorus gramineus GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  597 DGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            DGN GM TIPG +QIQFEGFCRF+DQGL EE +KFPKIEDTD
Sbjct:    4 DGNEGMFTIPGFSQIQFEGFCRFVDQGLMEEFHKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LEMMI (DNA-directed RNA polymerase subunit beta OS=Lemna minor GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DGN GM TIPG +QIQFEGFCRFI+QGL EE  KFPKIEDTD
Sbjct:    1 MLRDGNEGMFTIPGFSQIQFEGFCRFINQGLMEEFNKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_OLIPU (DNA-directed RNA polymerase subunit beta OS=Olimarabidopsis pumila GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_NASOF (DNA-directed RNA polymerase subunit beta OS=Nasturtium officinale GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LOBMA (DNA-directed RNA polymerase subunit beta OS=Lobularia maritima GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LEPVR (DNA-directed RNA polymerase subunit beta OS=Lepidium virginicum GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_DRANE (DNA-directed RNA polymerase subunit beta OS=Draba nemorosa GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CRUWA (DNA-directed RNA polymerase subunit beta OS=Crucihimalaya wallichii GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_BARVE (DNA-directed RNA polymerase subunit beta OS=Barbarea verna GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ARAHI (DNA-directed RNA polymerase subunit beta OS=Arabis hirsuta GN=rpoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RPOB_ACOGR6.534e-1480.95DNA-directed RNA polymerase subunit beta OS=Acorus... [more]
RPOB_LEMMI8.534e-1480.00DNA-directed RNA polymerase subunit beta OS=Lemna ... [more]
RPOB_OLIPU1.115e-1382.22DNA-directed RNA polymerase subunit beta OS=Olimar... [more]
RPOB_NASOF1.115e-1382.22DNA-directed RNA polymerase subunit beta OS=Nastur... [more]
RPOB_LOBMA1.115e-1382.22DNA-directed RNA polymerase subunit beta OS=Lobula... [more]
RPOB_LEPVR1.115e-1382.22DNA-directed RNA polymerase subunit beta OS=Lepidi... [more]
RPOB_DRANE1.115e-1382.22DNA-directed RNA polymerase subunit beta OS=Draba ... [more]
RPOB_CRUWA1.115e-1382.22DNA-directed RNA polymerase subunit beta OS=Crucih... [more]
RPOB_BARVE1.115e-1382.22DNA-directed RNA polymerase subunit beta OS=Barbar... [more]
RPOB_ARAHI1.115e-1382.22DNA-directed RNA polymerase subunit beta OS=Arabis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bp
GGGTGCAATAAAGGGGGGCGATGTATATATAGATAGCTATATCGGCACGG
GTTTACTAAATACAAGCCGTCTTACGCACTTCAATCCTATTCTAAAAATT
CGACTAAAAAAATAAAAAGGGGGTTCTTCGCAAATCATTTTTTGAACAGT
GGAATCCACGAAAAAGGTAAGTGCTAAAAAAATGAGCTTTACGCTGGTAT
ATTGTGTCTGATTCTTATGTCTTTATCTTAGCGAATAGATCAAATCACGA
CGTTTATTTTTCTGGTATCCTAACGGATTGGAATATCATAATAATGGTAT
AAATTGAATTATTTTTTTGATTCTATACAAAACTCCGTAAGTCTAAGTGG
AATTTATCGCTTCCTTTCCATTTGGATCTGTCTCTTAGAAATTCCAATTT
TATTAAGTATAAAATCATCCTTTTTCCCCCGTTCATACGTATTTCATACA
TTCCATCTATATGGAGTTGGGTAAAATTTCATGCGATTCAGTAAACAGAA
TCTAAATTCCAGCATTCTGCATCGAATCATATGAATCGATGCAGAATGAG
AAACGAATGGGATTTTTTGATAAATGGGAAATTCAAAATGCTCGGAGATG
GAAATGCAGGAATGTCTACAATACCTGGGTTGAATCAGATACAATTTGAA
GGATTTTGTAGGTTCATTGATCAGGGCTTAACAGAAGAGCTTTATAAGTT
TCCAAAAATTGAAGATACAGATTA
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