CK934395
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PHAAO (DNA-directed RNA polymerase subunit beta OS=Phalaenopsis aphrodite subsp. formosana GN=rpoB PE=3 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13 Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML +GN GMSTIPG +QIQFEGFCRFI+QGLTEE +KF KIED D Sbjct: 1 MLQNGNEGMSTIPGFSQIQFEGFCRFINQGLTEEFHKFQKIEDRD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_AETGR (DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflora GN=rpoB PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13 Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGDG G STIPG NQIQFEGF RFIDQGL EE+ KFPKIED D Sbjct: 1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEEVSKFPKIEDID 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_AETCO (DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium GN=rpoB PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13 Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGDG G STIPG NQIQFEGF RFIDQGL EE+ KFPKIED D Sbjct: 1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEEVSKFPKIEDID 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CAPBU (DNA-directed RNA polymerase subunit beta OS=Capsella bursa-pastoris GN=rpoB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13 Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MLGD G STIPGLNQIQFEGF RFIDQGL EEL KFPKIED D Sbjct: 1 MLGDEKEGTSTIPGLNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_IPOPU (DNA-directed RNA polymerase subunit beta OS=Ipomoea purpurea GN=rpoB PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13 Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 3 Query: 609 GMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 GM+TIPG NQIQFEGFCRFIDQGLTEEL KFPKIED D Sbjct: 5 GMTTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDID 42
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PIPCE (DNA-directed RNA polymerase subunit beta OS=Piper cenocladum GN=rpoB PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13 Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML + N GMSTIP +QIQFEGFCRFID GL EEL+KFPKIEDTD Sbjct: 1 MLRNRNEGMSTIPEFSQIQFEGFCRFIDWGLAEELHKFPKIEDTD 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_NYMAL (DNA-directed RNA polymerase subunit beta OS=Nymphaea alba GN=rpoB PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13 Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 3 Query: 588 MLGDG-NAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DG + GM TIPG +QIQFEGFCRFIDQGL EEL++FPKIEDTD Sbjct: 1 MLRDGGDEGMFTIPGFSQIQFEGFCRFIDQGLMEELHQFPKIEDTD 46
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LACSA (DNA-directed RNA polymerase subunit beta OS=Lactuca sativa GN=rpoB PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13 Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3 Query: 612 MSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 MSTIPG NQIQFEGFCRFIDQGLTEEL KFPKIEDT+ Sbjct: 1 MSTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDTN 37
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CUSRE (DNA-directed RNA polymerase subunit beta OS=Cuscuta reflexa GN=rpoB PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13 Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML DG G++TIPGLNQIQ EGFCRFIDQGL EEL KF KIED D Sbjct: 1 MLVDGKGGITTIPGLNQIQLEGFCRFIDQGLMEELSKFQKIEDID 45
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SORBI (DNA-directed RNA polymerase subunit beta OS=Sorghum bicolor GN=rpoB PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12 Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722 ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D Sbjct: 1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45 The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bpback to top |