CK934395

Overview
NameCK934395
Unique NameCK934395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PHAAO (DNA-directed RNA polymerase subunit beta OS=Phalaenopsis aphrodite subsp. formosana GN=rpoB PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGLTEE +KF KIED D
Sbjct:    1 MLQNGNEGMSTIPGFSQIQFEGFCRFINQGLTEEFHKFQKIEDRD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_AETGR (DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflora GN=rpoB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EE+ KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEEVSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_AETCO (DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium GN=rpoB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDG  G STIPG NQIQFEGF RFIDQGL EE+ KFPKIED D
Sbjct:    1 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEEVSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CAPBU (DNA-directed RNA polymerase subunit beta OS=Capsella bursa-pastoris GN=rpoB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGD   G STIPGLNQIQFEGF RFIDQGL EEL KFPKIED D
Sbjct:    1 MLGDEKEGTSTIPGLNQIQFEGFYRFIDQGLIEELSKFPKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_IPOPU (DNA-directed RNA polymerase subunit beta OS=Ipomoea purpurea GN=rpoB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 3
Query:  609 GMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            GM+TIPG NQIQFEGFCRFIDQGLTEEL KFPKIED D
Sbjct:    5 GMTTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDID 42          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PIPCE (DNA-directed RNA polymerase subunit beta OS=Piper cenocladum GN=rpoB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML + N GMSTIP  +QIQFEGFCRFID GL EEL+KFPKIEDTD
Sbjct:    1 MLRNRNEGMSTIPEFSQIQFEGFCRFIDWGLAEELHKFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_NYMAL (DNA-directed RNA polymerase subunit beta OS=Nymphaea alba GN=rpoB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 3
Query:  588 MLGDG-NAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DG + GM TIPG +QIQFEGFCRFIDQGL EEL++FPKIEDTD
Sbjct:    1 MLRDGGDEGMFTIPGFSQIQFEGFCRFIDQGLMEELHQFPKIEDTD 46          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LACSA (DNA-directed RNA polymerase subunit beta OS=Lactuca sativa GN=rpoB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  612 MSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MSTIPG NQIQFEGFCRFIDQGLTEEL KFPKIEDT+
Sbjct:    1 MSTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDTN 37          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CUSRE (DNA-directed RNA polymerase subunit beta OS=Cuscuta reflexa GN=rpoB PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML DG  G++TIPGLNQIQ EGFCRFIDQGL EEL KF KIED D
Sbjct:    1 MLVDGKGGITTIPGLNQIQLEGFCRFIDQGLMEELSKFQKIEDID 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SORBI (DNA-directed RNA polymerase subunit beta OS=Sorghum bicolor GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+QGL EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPD 45          
The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RPOB_PHAAO1.901e-1377.78DNA-directed RNA polymerase subunit beta OS=Phalae... [more]
RPOB_AETGR2.483e-1380.00DNA-directed RNA polymerase subunit beta OS=Aethio... [more]
RPOB_AETCO2.483e-1380.00DNA-directed RNA polymerase subunit beta OS=Aethio... [more]
RPOB_CAPBU3.243e-1382.22DNA-directed RNA polymerase subunit beta OS=Capsel... [more]
RPOB_IPOPU5.532e-1389.47DNA-directed RNA polymerase subunit beta OS=Ipomoe... [more]
RPOB_PIPCE7.225e-1377.78DNA-directed RNA polymerase subunit beta OS=Piper ... [more]
RPOB_NYMAL7.225e-1378.26DNA-directed RNA polymerase subunit beta OS=Nympha... [more]
RPOB_LACSA9.436e-1391.89DNA-directed RNA polymerase subunit beta OS=Lactuc... [more]
RPOB_CUSRE9.436e-1377.78DNA-directed RNA polymerase subunit beta OS=Cuscut... [more]
RPOB_SORBI1.232e-1275.56DNA-directed RNA polymerase subunit beta OS=Sorghu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bp
GGGTGCAATAAAGGGGGGCGATGTATATATAGATAGCTATATCGGCACGG
GTTTACTAAATACAAGCCGTCTTACGCACTTCAATCCTATTCTAAAAATT
CGACTAAAAAAATAAAAAGGGGGTTCTTCGCAAATCATTTTTTGAACAGT
GGAATCCACGAAAAAGGTAAGTGCTAAAAAAATGAGCTTTACGCTGGTAT
ATTGTGTCTGATTCTTATGTCTTTATCTTAGCGAATAGATCAAATCACGA
CGTTTATTTTTCTGGTATCCTAACGGATTGGAATATCATAATAATGGTAT
AAATTGAATTATTTTTTTGATTCTATACAAAACTCCGTAAGTCTAAGTGG
AATTTATCGCTTCCTTTCCATTTGGATCTGTCTCTTAGAAATTCCAATTT
TATTAAGTATAAAATCATCCTTTTTCCCCCGTTCATACGTATTTCATACA
TTCCATCTATATGGAGTTGGGTAAAATTTCATGCGATTCAGTAAACAGAA
TCTAAATTCCAGCATTCTGCATCGAATCATATGAATCGATGCAGAATGAG
AAACGAATGGGATTTTTTGATAAATGGGAAATTCAAAATGCTCGGAGATG
GAAATGCAGGAATGTCTACAATACCTGGGTTGAATCAGATACAATTTGAA
GGATTTTGTAGGTTCATTGATCAGGGCTTAACAGAAGAGCTTTATAAGTT
TCCAAAAATTGAAGATACAGATTA
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