CK934395

Overview
NameCK934395
Unique NameCK934395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4574 contig Csv1_Contig4574:526..1249. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_LOLPR (DNA-directed RNA polymerase subunit beta OS=Lolium perenne GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+Q L EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQALAEELNKFPAIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_WHEAT (DNA-directed RNA polymerase subunit beta OS=Triticum aestivum GN=rpoB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+Q L EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQALAEELDKFPTIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PELHO (DNA-directed RNA polymerase subunit beta OS=Pelargonium hortorum GN=rpoB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPK 707
            MLGD N GM+TIP LNQIQFEGFCRF+DQGL EEL +FPK
Sbjct:    1 MLGDRNEGMATIPALNQIQFEGFCRFLDQGLIEELSQFPK 40          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CYCTA (DNA-directed RNA polymerase subunit beta OS=Cycas taitungensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML D N G STIP   +IQFEGFCRFIDQGL EEL  FPKIEDTD
Sbjct:    1 MLLDENKGTSTIPEFGKIQFEGFCRFIDQGLIEELQNFPKIEDTD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_AGRST (DNA-directed RNA polymerase subunit beta OS=Agrostis stolonifera GN=rpoB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            ML +GN GMSTIPG +QIQFEGFCRFI+Q L EEL KFP I+D D
Sbjct:    1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQALAEELDKFPIIKDPD 45          
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_PINKO (DNA-directed RNA polymerase subunit beta OS=Pinus koraiensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 3
Query:  597 DGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            D N G  TIP   +IQFEGFCRFIDQGL EEL+ FPKIEDTD
Sbjct:    4 DENEGAFTIPEFGKIQFEGFCRFIDQGLMEELHNFPKIEDTD 45          
The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RPOB_LOLPR6.116e-1273.33DNA-directed RNA polymerase subunit beta OS=Lolium... [more]
RPOB_WHEAT7.988e-1273.33DNA-directed RNA polymerase subunit beta OS=Tritic... [more]
RPOB_PELHO7.988e-1280.00DNA-directed RNA polymerase subunit beta OS=Pelarg... [more]
RPOB_CYCTA1.043e-1175.56DNA-directed RNA polymerase subunit beta OS=Cycas ... [more]
RPOB_AGRST1.363e-1173.33DNA-directed RNA polymerase subunit beta OS=Agrost... [more]
RPOB_PINKO8.832e-1173.81DNA-directed RNA polymerase subunit beta OS=Pinus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bp
GGGTGCAATAAAGGGGGGCGATGTATATATAGATAGCTATATCGGCACGG
GTTTACTAAATACAAGCCGTCTTACGCACTTCAATCCTATTCTAAAAATT
CGACTAAAAAAATAAAAAGGGGGTTCTTCGCAAATCATTTTTTGAACAGT
GGAATCCACGAAAAAGGTAAGTGCTAAAAAAATGAGCTTTACGCTGGTAT
ATTGTGTCTGATTCTTATGTCTTTATCTTAGCGAATAGATCAAATCACGA
CGTTTATTTTTCTGGTATCCTAACGGATTGGAATATCATAATAATGGTAT
AAATTGAATTATTTTTTTGATTCTATACAAAACTCCGTAAGTCTAAGTGG
AATTTATCGCTTCCTTTCCATTTGGATCTGTCTCTTAGAAATTCCAATTT
TATTAAGTATAAAATCATCCTTTTTCCCCCGTTCATACGTATTTCATACA
TTCCATCTATATGGAGTTGGGTAAAATTTCATGCGATTCAGTAAACAGAA
TCTAAATTCCAGCATTCTGCATCGAATCATATGAATCGATGCAGAATGAG
AAACGAATGGGATTTTTTGATAAATGGGAAATTCAAAATGCTCGGAGATG
GAAATGCAGGAATGTCTACAATACCTGGGTTGAATCAGATACAATTTGAA
GGATTTTGTAGGTTCATTGATCAGGGCTTAACAGAAGAGCTTTATAAGTT
TCCAAAAATTGAAGATACAGATTA
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