CK934401

Overview
NameCK934401
Unique NameCK934401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12618 contig Csv1_Contig12618:72..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 58/137 (42.34%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A     + V  LYPGG FDPLGLA DP     L++ E+K+ RLAM +   F +QA
Sbjct:   99 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 235          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.525e-15
Identity = 71/210 (33.81%), Postives = 90/210 (42.86%), Query Frame = 1
Query:  238 PPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ E+K  RLAM++   F +QA
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 64/159 (40.25%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  391 DSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            D+ EL   P     E F   + RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   82 DTAELSADP-----ETFA--KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 75/230 (32.61%), Postives = 99/230 (43.04%), Query Frame = 1
Query:  193 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GVAWQDAG------KVELVEGSSYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            P   SDR+++       PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   GV + +AG      ++    G  YLG P      +L+ I   +V+++G +E  R A       +DP   LYPGG FDPLGLA  P     L++ EIK+ RLAM +   F +QA
Sbjct:   49 PWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.601e-15
Identity = 59/137 (43.07%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.601e-15
Identity = 58/137 (42.34%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.601e-15
Identity = 59/137 (43.07%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 58/137 (42.34%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 58/137 (42.34%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 58/137 (42.34%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  457 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB22_PEA1.525e-1542.34Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_MAIZE1.525e-1533.81Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_PETSP1.991e-1540.25Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_WHEAT1.991e-1532.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_SPIOL2.601e-1543.07Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_NICPL2.601e-1542.34Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_TOBAC2.601e-1543.07Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2G_SOLLC3.397e-1542.34Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC3.397e-1542.34Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB24_TOBAC3.397e-1542.34Chlorophyll a-b binding protein 40, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bp
GCGGGAGTACACTGGAAGTCACATATTCTATCCNNNATCNNNTTATCAGC
GATGGCCACCACCACTACAGCAGCAGCATCACATTTCTTCGGGACGAGAA
TTCATGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCCAGGTTC
AGCTTTCGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCCTACACG
AGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGGAATGGC
TCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGGCTGGGG
AAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCAGAACTT
GGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATTCCGGGG
AGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGGCTGCAG
AGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTTGGGTAC
CCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGCAGGATG
CTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAACCACTT
CCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGATTGGGTA
CATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGACTATACC
CTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCAGATCCTGGGAAGCTT
GAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAATGGTAGC
ATTTTTAATCTTTGGAATCCAGGCTGCTTTTA
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