CK934406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.664e-24 Identity = 72/258 (27.91%), Postives = 116/258 (44.96%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W L E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+ N+GR + ++AVAT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.664e-24 Identity = 72/258 (27.91%), Postives = 116/258 (44.96%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W L E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+ N+GR + ++AVAT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.173e-24 Identity = 74/258 (28.68%), Postives = 116/258 (44.96%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDGRLSVEK-----VALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W L E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+ N+GR + ++AVAT+ EL V K VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFENHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24 Identity = 75/258 (29.07%), Postives = 122/258 (47.29%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHV-----GANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W L E K SC + ISWNP +G + S+T +++E+ E ++ V L +D V+ +A+ N+GR + V+A+AT K + I+ + ++ +L V+ A GH +VW++ W+++ T LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGRSFHVLAIAT-KDVRIFKLIPMRKESSSSGPTKLEVQLQAQFDGHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNW 312
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 2.402e-23 Identity = 70/258 (27.13%), Postives = 116/258 (44.96%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W L E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+ N+GR + ++A+AT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.402e-23 Identity = 70/258 (27.13%), Postives = 116/258 (44.96%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W L E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+ N+GR + ++A+AT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHAPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLLTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.138e-23 Identity = 70/258 (27.13%), Postives = 116/258 (44.96%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W L E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+ N+GR + ++A+AT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAHFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.192e-22 Identity = 71/258 (27.52%), Postives = 115/258 (44.57%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ W + + T V DV+F L L +DG V+VYE D + L W L E + C S ISWNP +G + +P + +++E++E ++ L +D V+ +A+ N+GR + ++AVAT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHEVSCKL----------CCSC-ISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAVATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.557e-22 Identity = 74/259 (28.57%), Postives = 118/259 (45.56%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW--EFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQ-----KGIAIWHVGANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745 FG +A D + +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W L E K +C + ISWNP +G D+ S KV E++E ++ L +D V+ +A+ N+GR + V+A+AT+ K + + AN + V+ +A H +VW++ W+++ T LA++G DG VRLW++N W Sbjct: 70 FGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLAC--SCISWNPSSSRAHPPMIAVG-GDDSNGAYSGKVQIHEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHVLAIATKDVRIFKLLPLRRESANSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNW 313
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEC13_CANAL (Protein transport protein SEC13 OS=Candida albicans GN=SEC13 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.541e-14 Identity = 71/257 (27.63%), Postives = 111/257 (43.19%), Query Frame = 2 Query: 5 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSF------VLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWT-LNIGRPYEVIAVATQ-KGIAIWHVGANPELDGRLSVEKVALLSGHGGEV-WQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWD 748 FG +A DG L+W+E E Q W + V V + L+ SDG V V + D + S +F + + S +W P ++ S+ ++ SD N +K+W++D A+N ++ A+L E +D V VAW+ N+ R Y IA A+Q + + IW + DG+ +K L +V W+ W +SG LA +G D V LW+ NL G W+ Sbjct: 67 FGSILASCSYDGKALIWKEQPETQQ---WSIIAEHTVHQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFND--------------DGTTSHVIFDAHAIGANSATWAPVSTSSKDSAALKQQRRIVSCGSD----NLAKIWKYDAANNTYVEEAKL---EGHTDWVRDVAWSPSNLIRSY--IATASQDRTVLIW----TQDRDGKW--QKQLLTEEKFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWE 291 The following BLAST results are available for this feature:
BLAST of CK934406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934406 ID=CK934406; Name=CK934406; organism=Citrus sinensis; type=EST; length=798bpback to top |