CK934415
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.316e-26 Identity = 99/284 (34.86%), Postives = 131/284 (46.13%), Query Frame = 1 Query: 103 FIGTRLPDIYSNSGRIQARFGFGKRKTAPKKSKQSSGS----SDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSEL---DPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDP 894 F G +L + S ++ A G + + KSK SGS SDRPL+ P +L G GDYG+D GL E AKN RE E+IH RWAML LG +T E L G+ W AG EG YLG P +++ I +V+++G +E R + + E +YPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+VTGKGP+ + HL+DP Sbjct: 12 FSGQQLKPVNELSRKVGA--GEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.718e-26 Identity = 102/281 (36.30%), Postives = 133/281 (47.33%), Query Frame = 1 Query: 139 SGRIQAR-FGFGK---RKTAPKKSKQSSGS----SDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 +G+ A+ FG G+ RK+A K +SGS +DR L+ + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P ++ IW ++V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 14 AGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 6.530e-26 Identity = 100/266 (37.59%), Postives = 125/266 (46.99%), Query Frame = 1 Query: 175 RKTAPK-KSKQSSGS----SDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 RKTA K K SSGS +DR L+ + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P ++ IW ++V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 33 RKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.455e-25 Identity = 96/272 (35.29%), Postives = 123/272 (45.22%), Query Frame = 1 Query: 166 FGKRKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 F RK+A K SSGS WY ++P +L G GDYG+D GL E +KN RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+VTGKGPL A HLSDP++ Sbjct: 34 FTMRKSATTKKVASSGSP----WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFSKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.900e-25 Identity = 97/269 (36.06%), Postives = 121/269 (44.98%), Query Frame = 1 Query: 175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 RKTA K SSGS WY ++P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 36 RKTATKAKPASSGSP----WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.900e-25 Identity = 96/270 (35.56%), Postives = 121/270 (44.81%), Query Frame = 1 Query: 142 GRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 GRI R GK KT S + L ++P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 31 GRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.900e-25 Identity = 97/269 (36.06%), Postives = 121/269 (44.98%), Query Frame = 1 Query: 175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 RKTA K SSGS WY ++P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 36 RKTASKAKTVSSGSP----WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.900e-25 Identity = 97/269 (36.06%), Postives = 121/269 (44.98%), Query Frame = 1 Query: 175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 RKTA K SSGS WY ++P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 35 RKTASKAKPVSSGSP----WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25 Identity = 85/233 (36.48%), Postives = 107/233 (45.92%), Query Frame = 1 Query: 244 AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897 A+ P +L+G GDYG+D GL E R R E+IHGRWAML LG + E L G+ W AG EG YLG P SI ++ +VL++G +E R + LD LYPGG++FDPLGLA DP A L++ EIK+ RLAM + GF VQA+VTGKGPL HL DP+ Sbjct: 64 AQTPSYLNGEFPGDYGWDTAGLSADPE-------------------------------------------AFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25 Identity = 93/270 (34.44%), Postives = 122/270 (45.19%), Query Frame = 1 Query: 166 FGKRKTAPKKSKQSSGSSDRPLWYPGAKA----------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 FG + +K+ + +G S P WY + P +L G GDYG+D GL E A+N RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R + P E LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 28 FGTGRVTMRKTVKPTGPSGSP-WYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252 The following BLAST results are available for this feature:
BLAST of CK934415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934415 ID=CK934415; Name=CK934415; organism=Citrus sinensis; type=EST; length=925bpback to top |