CK934415

Overview
NameCK934415
Unique NameCK934415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934415_ssr77 microsatellite CK934415_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:14..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.429e-25
Identity = 98/266 (36.84%), Postives = 123/266 (46.24%), Query Frame = 1
Query:  175 RKTAPK-KSKQSSGSS----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKTA K K   SSGS     DR L+      + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R         +DP   LYPGG F DPLGLA DPE  A +++ E+K+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   33 RKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTF-DPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.429e-25
Identity = 97/269 (36.06%), Postives = 119/269 (44.24%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKT  K    SSGS     WY             +AP +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL+    HL+DP++
Sbjct:   36 RKTVTKAKPVSSGSP----WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.429e-25
Identity = 96/276 (34.78%), Postives = 123/276 (44.57%), Query Frame = 1
Query:  133 SNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPG---AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            S+S  +Q       RKTA  K   S       + Y G    ++P +L G   GDYG+D  GL    E             AKN                                RE E+IHGRWAML  LG +  E L   G+      W   G     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA D E  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   22 SSSSEVQGDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.608e-24
Identity = 96/269 (35.69%), Postives = 119/269 (44.24%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKTA K    SSGS     WY             +AP +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E     G+      W  AG     EG   YLG P      +++ I   +VL++G +E  R +       +DP   LYPGG F DPLGLA DPE  A L++ E K+ RLAM +  GF +QA+VTGKGPL   A HL DP++
Sbjct:   36 RKTATKAKPVSSGSP----WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 92/265 (34.72%), Postives = 118/265 (44.53%), Query Frame = 1
Query:  163 GFGKRKTAPKKSKQSSG-SSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDP 894
            G  + K AP KS        DR  W        P +L G   GDYG+D  GL    E  +                                           ++RE E+IH RWA+L  LG LT E L+   G+      W  AG     EG   YLG P      +I   + ++V+++G IE  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+   A HL+DP
Sbjct:   23 GTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFK-------------------------------------------KYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 95/269 (35.32%), Postives = 119/269 (44.24%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKT  K    SSGS     WY             ++P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++  IK+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   36 RKTVTKAKPLSSGSP----WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.744e-24
Identity = 94/266 (35.34%), Postives = 121/266 (45.49%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSS-----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RK   KK   S+ +S     DR L+      + P +L G   GDYG+D  GL    E           N AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+   A HL+DP++
Sbjct:   42 RKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------NFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.744e-24
Identity = 96/269 (35.69%), Postives = 119/269 (44.24%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKT  K    SSGS     WY             +AP +L G   GDYG+D   L    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   36 RKTVTKAKPVSSGSP----WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.744e-24
Identity = 92/263 (34.98%), Postives = 119/263 (45.25%), Query Frame = 1
Query:  166 FGKRKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            F  R+T     +     +DRP +      + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+   A H++DP+
Sbjct:   34 FSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 91/271 (33.58%), Postives = 122/271 (45.02%), Query Frame = 1
Query:  142 GRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            G ++AR    +  +    S      +DRP +      + P +L+G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG LT E L  +G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL     HL+DP+
Sbjct:   30 GNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPE-----------TFARN--------------------------------RELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253          
The following BLAST results are available for this feature:
BLAST of CK934415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB29_MAIZE9.429e-2536.84Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB27_TOBAC9.429e-2536.06Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_HORVU9.429e-2534.78Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PETSP1.608e-2435.69Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2_CHLMO2.101e-2434.72Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_TOBAC2.101e-2435.32Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB2B_PINSY2.744e-2435.34Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_PETSP2.744e-2435.69Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_LEMGI2.744e-2434.98Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA3.583e-2433.58Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934415 ID=CK934415; Name=CK934415; organism=Citrus sinensis; type=EST; length=925bp
GCGGGGGAACAAGNNNCAATTTCAATCAACACTACACACCCCACCGTAAG
TTAGCCACAAGCCATGGCCTCAACCACAGCAGCAGCAGCCGCCACATCAT
CTTTCATTGGCACCCGCCTCCCCGACATTTACTCAAACTCGGGCCGTATC
CAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACAGCACCCAAAAAGTCGAA
ACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCCAAGG
CACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGACCCG
TTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAGTATGACTATGACTCGTT
GGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTATTGGGACGAGGA
TTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGAAGTC
TTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGC
CATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTA
CTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTG
GGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTT
GGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGA
AGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCT
GACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCG
CCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCG
GAAAAGGCCCTCTCAACANNTGGGCTACCCACTTGAGCGATCCTCTTCAC
ACAACCATTCTTGACACCTTCATCT
back to top