CK934415

Overview
NameCK934415
Unique NameCK934415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934415_ssr77 microsatellite CK934415_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:14..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 87/231 (37.66%), Postives = 112/231 (48.48%), Query Frame = 1
Query:  253 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDP 894
            PE+L G   GDYG+D  GL                                ++D Q+             R+RE ELIH RWA+L  LG LT E L+   G+      W  AG     +G  +YLG        SI   + ++V+++G  E  R    SE  LD    LYPGG F DPLGLA DP+  A L++ EIK+ RLAM + LGF VQA+VTGKGP+     HL+DP
Sbjct:   51 PEYLTGEFPGDYGWDTAGL--------------------------------SADPQT-----------FARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 91/269 (33.83%), Postives = 121/269 (44.98%), Query Frame = 1
Query:  139 SGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            SGR+  R    K K  P  S        + L     ++P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+   A HL+DP++
Sbjct:   30 SGRVTMRKTVAKPK-GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 94/265 (35.47%), Postives = 124/265 (46.79%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGS----SDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GITWQDAG------KVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKTA K  + SS S    SDR L+      + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+ + +AG      ++    G  YLG P      +L+ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  P+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A H++DP++
Sbjct:   35 RKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 91/269 (33.83%), Postives = 121/269 (44.98%), Query Frame = 1
Query:  139 SGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            SGR+  R    K K  P  S        + L     ++P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+   A HL+DP++
Sbjct:   30 SGRVTMRKTVAKPK-GPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.680e-24
Identity = 98/283 (34.63%), Postives = 121/283 (42.76%), Query Frame = 1
Query:  133 SNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            S+S  I        RKT  K    SS S     WY             +AP +L G    DYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E     GI      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   22 SSSSEITGNGKVTMRKTVTKAKPASSSSP----WYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.112e-24
Identity = 91/269 (33.83%), Postives = 119/269 (44.24%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--------GITWQDAGKVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKTA K    SS S     WY             ++P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L          + ++   ++    G  YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   36 RKTASKAKPVSSSSP----WYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.112e-24
Identity = 97/279 (34.77%), Postives = 124/279 (44.44%), Query Frame = 1
Query:  121 PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            P+I  N GR+  R    K    P  S       DR  +      ++P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   25 PEITGN-GRVSMR----KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 80/262 (30.53%), Postives = 116/262 (44.27%), Query Frame = 1
Query:  211 GSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLHTTIL 912
            G  DRPLW+   ++  +LDGSL GDYGFDP GL  P                    G  I              +P    +G       E+I+GR+AML  +GA+  E+L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK         YPGG FF+PLG   D +    L+L E+K+ RLAM+A LG+ +Q +VTG GP      H++DP++  +L
Sbjct:   51 GGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP-----------------EGTGGFI--------------EPRWLAYG-------EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVL 269          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.043e-23
Identity = 95/266 (35.71%), Postives = 122/266 (45.86%), Query Frame = 1
Query:  175 RKTAPK-KSKQSSGSS----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKTA K K   +SGS     DR L+      + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE    L++ E+K  RLAM++  GF VQA+VTGKGPL   A H++DP++
Sbjct:   33 RKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVN 251          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.043e-23
Identity = 95/270 (35.19%), Postives = 120/270 (44.44%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKT  K    SSGS     WY             +AP +L G   GDYG+D  GL   PA +            AKN                                R+ E+IH RW ML  LG +  E     G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   35 RKTVTKAKPVSSGSP----WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATF------------AKN--------------------------------RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
The following BLAST results are available for this feature:
BLAST of CK934415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_DUNTE3.583e-2437.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ARATH3.583e-2433.83Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT3.583e-2435.47Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ARATH3.583e-2433.83Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_PETSP4.680e-2434.63Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_NICPL6.112e-2433.83Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC6.112e-2434.77Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB23_PEA7.982e-2430.53Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_MAIZE1.043e-2335.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PETSP1.043e-2335.19Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934415 ID=CK934415; Name=CK934415; organism=Citrus sinensis; type=EST; length=925bp
GCGGGGGAACAAGNNNCAATTTCAATCAACACTACACACCCCACCGTAAG
TTAGCCACAAGCCATGGCCTCAACCACAGCAGCAGCAGCCGCCACATCAT
CTTTCATTGGCACCCGCCTCCCCGACATTTACTCAAACTCGGGCCGTATC
CAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACAGCACCCAAAAAGTCGAA
ACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCCAAGG
CACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGACCCG
TTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAGTATGACTATGACTCGTT
GGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTATTGGGACGAGGA
TTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGAAGTC
TTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGC
CATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTA
CTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTG
GGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTT
GGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGA
AGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCT
GACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCG
CCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCG
GAAAAGGCCCTCTCAACANNTGGGCTACCCACTTGAGCGATCCTCTTCAC
ACAACCATTCTTGACACCTTCATCT
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