CK934415

Overview
NameCK934415
Unique NameCK934415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934415_ssr77 microsatellite CK934415_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:14..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.362e-23
Identity = 94/266 (35.34%), Postives = 120/266 (45.11%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSS-----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RK   KKS  +S  S     DR L+      + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+   A HL+DP++
Sbjct:   46 RKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.362e-23
Identity = 90/274 (32.85%), Postives = 125/274 (45.62%), Query Frame = 1
Query:  148 IQARFGFGKRKTAPKKSKQSSGSS-----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            I+ R  FG+ +   +++ +S+  S     DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG    E L   G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP   LYPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+     H++DP+
Sbjct:   24 IRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.323e-23
Identity = 93/285 (32.63%), Postives = 125/285 (43.86%), Query Frame = 1
Query:  133 SNSGRIQARFGFGKRKTA-PKKSKQSSGSS----DRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGIT--------WQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            S++  ++A    G+ K A P +   + GS+       LWY            A+ P +L+G   GDYG+D  GL    E             AKN                                R  E+IHGRWAML  LG +  E L            W  AG     +G   YLG P      SI  ++  +V+++G +E  R + L        LYPGG++FDPLGLA DP   A L++ EIK+ RLAM +  GF VQA+VTGKGPL     HL +P+
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAF-----------AKN--------------------------------RALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 94/296 (31.76%), Postives = 130/296 (43.92%), Query Frame = 1
Query:  103 FIGTRLPDIYSNSGRIQARFG-FGKRKTAPKKS---KQSSGSSDRPLWYP---------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            F G +L  +   + ++    G  G+ +   +K+   K  + S D P + P           + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A +++ EIK+ RLAM +  GF VQA+VTGKGP+   A HL+DP++
Sbjct:   16 FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 87/260 (33.46%), Postives = 119/260 (45.77%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+T     W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+   + H++DP+
Sbjct:   10 RRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPV 222          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 92/287 (32.06%), Postives = 128/287 (44.60%), Query Frame = 1
Query:  103 FIGTRLPDIYSNSGRIQARFGFGK---RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            F+G  +    +   R    FG G+   R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+   + H++DP+
Sbjct:   11 FVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.758e-23
Identity = 90/268 (33.58%), Postives = 122/268 (45.52%), Query Frame = 1
Query:  160 FGFGK---RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            FG G+   R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+T     W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+     H++DP+
Sbjct:   30 FGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPV 250          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.826e-23
Identity = 89/266 (33.46%), Postives = 114/266 (42.86%), Query Frame = 1
Query:  169 GKRKTAPKKSKQSSG----SSDRPLW---YPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIW---IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDP 894
            GK+  A   + +SSG      +R  W   Y     P +L G   GDYG+D  GL    E  +                                           R+RE ELIH RWAML  LG  T E L           W  AG     EG   YLG P       ++    ++V+++G IE  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLA  +  GF VQA+VTGKGP+     HL++P
Sbjct:   19 GKKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFK-------------------------------------------RYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.153e-22
Identity = 93/269 (34.57%), Postives = 119/269 (44.24%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RKT  K+   SSGS     WY             + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL   A HL+ P++
Sbjct:   34 RKTVTKQV--SSGSP----WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.966e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  469 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:   86 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 242          
The following BLAST results are available for this feature:
BLAST of CK934415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2A_PINSY1.362e-2335.34Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB215_PEA1.362e-2332.85Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC2.323e-2332.63Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_PYRPY5.174e-2331.76Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB25_SOLLC5.174e-2333.46Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC5.174e-2332.06Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP6.758e-2333.58Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB2_CHLRE8.826e-2333.46Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOYBN1.153e-2234.57Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_SOYBN1.966e-2243.48Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934415 ID=CK934415; Name=CK934415; organism=Citrus sinensis; type=EST; length=925bp
GCGGGGGAACAAGNNNCAATTTCAATCAACACTACACACCCCACCGTAAG
TTAGCCACAAGCCATGGCCTCAACCACAGCAGCAGCAGCCGCCACATCAT
CTTTCATTGGCACCCGCCTCCCCGACATTTACTCAAACTCGGGCCGTATC
CAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACAGCACCCAAAAAGTCGAA
ACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCCAAGG
CACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGACCCG
TTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAGTATGACTATGACTCGTT
GGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTATTGGGACGAGGA
TTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGAAGTC
TTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGC
CATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTA
CTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTG
GGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTT
GGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGA
AGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCT
GACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCG
CCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCG
GAAAAGGCCCTCTCAACANNTGGGCTACCCACTTGAGCGATCCTCTTCAC
ACAACCATTCTTGACACCTTCATCT
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