CK934415

Overview
NameCK934415
Unique NameCK934415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934415_ssr77 microsatellite CK934415_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:14..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.966e-22
Identity = 83/232 (35.78%), Postives = 108/232 (46.55%), Query Frame = 1
Query:  253 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+     HL+DP+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22
Identity = 83/233 (35.62%), Postives = 107/233 (45.92%), Query Frame = 1
Query:  253 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            P +L G   GDYG+D  GL    E             AKN                                RE E+IH  WAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:    7 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.354e-22
Identity = 89/284 (31.34%), Postives = 116/284 (40.85%), Query Frame = 1
Query:  136 NSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLHTTILDT 918
            +SG++     F     +P  S +         W PG  +P +L GSL GD GFDP GL +  E L++                                           F + EL++GRWAML   G L  E  T I       W  AGK E    SS           TL  IE ++  Y+E +R  ++        DP  + Y         PGG  F+PL  A   E K      EI + RLAM+AFLGF +Q  VTGKGP +    H+SDP H TI+ T
Sbjct:   26 SSGKLNRGVAFRPVGCSPSASFKVEAKKGE--WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRW-------------------------------------------FVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.354e-22
Identity = 83/235 (35.32%), Postives = 109/235 (46.38%), Query Frame = 1
Query:  247 KAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            ++P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  PE  A L++ E+K+ RLAM +  GF V A+VTGKGPL   A HL+DP++
Sbjct:   27 ESPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 92/270 (34.07%), Postives = 122/270 (45.19%), Query Frame = 1
Query:  169 GKRKTAPKKSKQSSGSSDRPLWYP---------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLG-QPLPFSITTL-IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            G  + + +K+   + SS  P + P           + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+     +W  AG     EG   YLG Q L  + + L IW  +V+++G +E  R          DP   +YPGG F DPL LA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A HL++P++
Sbjct:    9 GVGRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.758e-22
Identity = 85/260 (32.69%), Postives = 118/260 (45.38%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+     H++DP+
Sbjct:   36 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.758e-22
Identity = 85/260 (32.69%), Postives = 118/260 (45.38%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+     H++DP+
Sbjct:   36 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.664e-21
Identity = 86/260 (33.08%), Postives = 116/260 (44.62%), Query Frame = 1
Query:  175 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897
            R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ +   +V+++G IE  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+     H++DP+
Sbjct:   38 RRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.174e-21
Identity = 88/297 (29.63%), Postives = 126/297 (42.42%), Query Frame = 1
Query:  106 IGTRLPDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLHTTIL 912
            IG+R+    S S   +A F      T P K       ++R LW+   ++  +LDG L GD+GFDP GL  P                    G  I              +P    +G       E+I+GR+AML   GA+  E L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK L       YPGG  F+PLG   D +    L+L EIK+ RLAM+A LG+ +QA+VTG GP      HL+DP++  +L
Sbjct:   23 IGSRI----SQSVTRKASFVVRAASTPPVKQ-----GANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDP-----------------EGTGGFI--------------EPKWLAYG-------EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVL 267          
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.708e-21
Identity = 93/273 (34.07%), Postives = 122/273 (44.69%), Query Frame = 1
Query:  160 FGFGK---RKTAPKKSKQSSGS----SDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            FG G+   RKTA K     SGS    +DR L+        P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWA+   LG +  E L   G+      W  AG     EG  S+ G P      +++ I   +V+++G +E            +DP   LY GG F DPLGL  DPE+ A L++ EIK+ RLAM +  GF VQA+VTGKGP+   A HL+DP++
Sbjct:   25 FGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSF-DPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250          
The following BLAST results are available for this feature:
BLAST of CK934415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB21_GOSHI1.966e-2235.78Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_CUCSA2.568e-2235.62Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB24_PEA3.354e-2231.34Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB21_PEA3.354e-2235.32Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_SOYBN4.380e-2234.07Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_ORYSJ9.758e-2232.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI9.758e-2232.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC1.664e-2133.08Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB13_SOLLC2.174e-2129.63Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB48_MAIZE3.708e-2134.07Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934415 ID=CK934415; Name=CK934415; organism=Citrus sinensis; type=EST; length=925bp
GCGGGGGAACAAGNNNCAATTTCAATCAACACTACACACCCCACCGTAAG
TTAGCCACAAGCCATGGCCTCAACCACAGCAGCAGCAGCCGCCACATCAT
CTTTCATTGGCACCCGCCTCCCCGACATTTACTCAAACTCGGGCCGTATC
CAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACAGCACCCAAAAAGTCGAA
ACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCCAAGG
CACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGACCCG
TTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAGTATGACTATGACTCGTT
GGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTATTGGGACGAGGA
TTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGAAGTC
TTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGC
CATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTA
CTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTG
GGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTT
GGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGA
AGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCT
GACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCG
CCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCG
GAAAAGGCCCTCTCAACANNTGGGCTACCCACTTGAGCGATCCTCTTCAC
ACAACCATTCTTGACACCTTCATCT
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