CK934415
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.843e-21 Identity = 68/164 (41.46%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 460 QRFRECELIHGRWAMLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDP 894 +R+RE ELIH R +L LG +T E L W AG +G +YLG P +I + ++V+++G +E R LDP LYPG + FDPLGLA DP+ A L++ EIK+ RLAM A LGF VQA+VTGKGP+ HL++P Sbjct: 99 KRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.139e-20 Identity = 90/277 (32.49%), Postives = 115/277 (41.52%), Query Frame = 1 Query: 124 DIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897 ++ G QAR R+T + DRP + P +L G GDYG+D + E AKN RE E+IH RWAML LG + E L W AG EG Y G P +++ I +V+++G IE R LDP L PGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ HL+DP+ Sbjct: 24 ELVKKVGTAQARITM--RRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAF-DPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.837e-18 Identity = 74/262 (28.24%), Postives = 109/262 (41.60%), Query Frame = 1 Query: 184 APKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLHTTILDT 918 +P+ +++ + W PG ++P +LDGSL GD GFDP L + E L++ F + ++++GRWAML G L E LT AG + E G+ F+ ++ + Y+E +R + L P + YPG + F+PL A K+ E+ + RLAM+AFLGF VQ V GKGP HL+DP H TI+ T Sbjct: 20 SPRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRW-------------------------------------------FVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-RVFNPLNFAPLENKEK-----ELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQT 227
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.545e-18 Identity = 75/234 (32.05%), Postives = 96/234 (41.03%), Query Frame = 1 Query: 226 PLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN-SELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLHTTILDTFI 924 PLW+P AP WL+G GD GFDP GL A+D + +R R E+ HGR AMLA +GAL ++L W +A + ++ +G + I G E R E +YPG FDPL L D K+A EIK+ RLA+ A LGF VQ V G PL A HL PL I D+ + Sbjct: 3 PLWFPNTLAPSWLNGEYYGDRGFDPAGL--------------------------------AADPDT-----------FERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQ------NAGIG-------LKEVAIFTAAYGVFEVARGVKENSDPTTIYPG---FDPLNLTTDYTKEA-----EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSIM 172
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 9.451e-17 Identity = 88/261 (33.72%), Postives = 111/261 (42.53%), Query Frame = 1 Query: 163 GFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEW---LDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI-------TWQDAGKVELVEGS-SYLGQPL---PFSITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHL 885 GF K A K SK SS + DR + Y G + EW L G GDYG+D GL + + AKN RE E+IH R AM A LG + E L+ + W AG EG YLG P SI + +V+++G +E R DP LYPG FD LGLA D E A L++ E+K+ RLAM + GF VQA+V+ K L A HL Sbjct: 38 GFTMLKHAAK-SKVSSSTCDRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGL-----------SAYPETFAKN--------------------------------RELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDP---LYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.106e-16 Identity = 57/125 (45.60%), Postives = 72/125 (57.60%), Query Frame = 1 Query: 553 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPL 897 W AG EG YLG P +++ I +V+++G IE R LDP LYPG F DPLGLA DPE KA L++ EIK+ RLAM + GF VQA+VTGKGP+ HL+DP+ Sbjct: 15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.782e-15 Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 634 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 IW +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 11 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.782e-15 Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 634 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 IW +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.782e-15 Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 634 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900 IW +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL A HL+DP++ Sbjct: 160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.328e-15 Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1 Query: 619 SITTLIWIEVLVIGYIEFQRNSELDPEK------RLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDP 894 S+ ++ +VL++G +E R P + RLYPGG F DPLGLA DP+ L++ EIK+ RLAM LGF QA+VTG+GP+ W HL DP Sbjct: 10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPF-DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106 The following BLAST results are available for this feature:
BLAST of CK934415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934415 ID=CK934415; Name=CK934415; organism=Citrus sinensis; type=EST; length=925bpback to top |