CK934415

Overview
NameCK934415
Unique NameCK934415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934415_ssr77 microsatellite CK934415_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:14..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.040e-15
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:  634 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
[Close]
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.040e-15
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:  634 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
[Close]
BLAST of CK934415 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.846e-15
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:  595 YLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNXWATHLSDPLH 900
            YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPL    DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL   A HL+DP++
Sbjct:    3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110
The following BLAST results are available for this feature:
BLAST of CK934415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2F_SOLLC3.040e-1550.00Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.040e-1550.00Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA8.846e-1544.95Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_C12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934415 ID=CK934415; Name=CK934415; organism=Citrus sinensis; type=EST; length=925bp
GCGGGGGAACAAGNNNCAATTTCAATCAACACTACACACCCCACCGTAAG
TTAGCCACAAGCCATGGCCTCAACCACAGCAGCAGCAGCCGCCACATCAT
CTTTCATTGGCACCCGCCTCCCCGACATTTACTCAAACTCGGGCCGTATC
CAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACAGCACCCAAAAAGTCGAA
ACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCCAAGG
CACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGACCCG
TTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAGTATGACTATGACTCGTT
GGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTATTGGGACGAGGA
TTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGAAGTC
TTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGC
CATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTA
CTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTG
GGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTT
GGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGA
AGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCT
GACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCG
CCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCG
GAAAAGGCCCTCTCAACANNTGGGCTACCCACTTGAGCGATCCTCTTCAC
ACAACCATTCTTGACACCTTCATCT
back to top