CK934416

Overview
NameCK934416
Unique NameCK934416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:933..1574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC4_RAT (Chloride intracellular channel protein 4 OS=Rattus norvegicus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 8.230e-15
Identity = 55/213 (25.82%), Postives = 98/213 (46.01%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K+    F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPAHLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPGEIDENSMEDIKSSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEF 230          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC4_PONAB (Chloride intracellular channel protein 4 OS=Pongo abelii GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 55/213 (25.82%), Postives = 97/213 (45.54%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVSTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEF 230          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC4_MOUSE (Chloride intracellular channel protein 4 OS=Mus musculus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.127e-14
Identity = 55/213 (25.82%), Postives = 97/213 (45.54%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEF 230          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC4_BOVIN (Chloride intracellular channel protein 4 OS=Bos taurus GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.127e-14
Identity = 55/213 (25.82%), Postives = 97/213 (45.54%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+++   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEF 230          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC2_HUMAN (Chloride intracellular channel protein 2 OS=Homo sapiens GN=CLIC2 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.127e-14
Identity = 58/214 (27.10%), Postives = 100/214 (46.73%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA      I G+CPF QR  + L  K V +    ++++ KP+   ++ P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL+E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y    +A E F
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEF 225          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC4_HUMAN (Chloride intracellular channel protein 4 OS=Homo sapiens GN=CLIC4 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 4.084e-14
Identity = 55/213 (25.82%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEF 230          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC2_RAT (Chloride intracellular channel protein 2 OS=Rattus norvegicus GN=Clic2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.099e-14
Identity = 59/214 (27.57%), Postives = 98/214 (45.79%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA      I G+CPF QR  + L  K V +    I+ + KP+   ++ P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y    +A E F
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTIDTARKPEELKDLAPGTNPPFLIYNKELKTDFIKIEEFLEKTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLREFKRLDDYLNTPLLDEIDPDSTEERTLSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEF 225          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC5_RAT (Chloride intracellular channel protein 5 OS=Rattus norvegicus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.188e-13
Identity = 56/214 (26.17%), Postives = 101/214 (47.20%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F
Sbjct:   16 IELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAARH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNTPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEF 227          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC5_MOUSE (Chloride intracellular channel protein 5 OS=Mus musculus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.188e-13
Identity = 56/214 (26.17%), Postives = 101/214 (47.20%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F
Sbjct:   16 IELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEF 227          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC5_BOVIN (Chloride intracellular channel protein 5 OS=Bos taurus GN=CLIC5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 56/220 (25.45%), Postives = 98/220 (44.55%), Query Frame = 1
Query:   55 SAKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT-----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            SA   + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+     D + I   +E     EKYP  +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                     F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y K  +A + F
Sbjct:  196 SASPEINLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPRLAAKH-RESNTAGIDIFVKFSAYIKNTKQQSNAALERGLTKALKKLDDYLNTPLPEEIDADTRGDDEKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDFPAEMTGLWRYLKNAYARDEF 413          
The following BLAST results are available for this feature:
BLAST of CK934416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CLIC4_RAT8.230e-1525.82Chloride intracellular channel protein 4 OS=Rattus... [more]
CLIC4_PONAB1.833e-1425.82Chloride intracellular channel protein 4 OS=Pongo ... [more]
CLIC4_MOUSE3.127e-1425.82Chloride intracellular channel protein 4 OS=Mus mu... [more]
CLIC4_BOVIN3.127e-1425.82Chloride intracellular channel protein 4 OS=Bos ta... [more]
CLIC2_HUMAN3.127e-1427.10Chloride intracellular channel protein 2 OS=Homo s... [more]
CLIC4_HUMAN4.084e-1425.82Chloride intracellular channel protein 4 OS=Homo s... [more]
CLIC2_RAT9.099e-1427.57Chloride intracellular channel protein 2 OS=Rattus... [more]
CLIC5_RAT1.188e-1326.17Chloride intracellular channel protein 5 OS=Rattus... [more]
CLIC5_MOUSE1.188e-1326.17Chloride intracellular channel protein 5 OS=Mus mu... [more]
CLIC5_BOVIN1.716e-1225.45Chloride intracellular channel protein 5 OS=Bos ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934416 ID=CK934416; Name=CK934416; organism=Citrus sinensis; type=EST; length=642bp
GGGGGTTGTCGGGTTTTCACTAACTGCAACATACACTCTCTCTGATCACT
CAATTCCGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCG
CTCCTGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACT
TTGGAGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGA
CAAGCCTCAATGGTTTTTGGAGATAACCCCAGAAGGGAAAGTACCTGTGG
TAAAGTTTGATGACAAGTGGGTGGCTGACTCTGATGTGATTGTTAGAATT
ATTGAGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGC
CTCTGTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCA
AGGACCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCA
TTGGATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAGAA
GGTCACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGG
TAGCTCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCAC
GTCCATGGGTACNNNAAGAAGCTTTTTGCTCTGGAATCCTTT
back to top