CK934416

Overview
NameCK934416
Unique NameCK934416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:933..1574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC5_HUMAN (Chloride intracellular channel protein 5 OS=Homo sapiens GN=CLIC5 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.241e-12
Identity = 54/214 (25.23%), Postives = 98/214 (45.79%), Query Frame = 1
Query:   70 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYXKKLFALESF 642
            + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     + P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                    F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F
Sbjct:  175 IYLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEF 386          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: CLIC3_HUMAN (Chloride intracellular channel protein 3 OS=Homo sapiens GN=CLIC3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 56/211 (26.54%), Postives = 92/211 (43.60%), Query Frame = 1
Query:   58 AKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH------GGP--------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGY 612
            A+  +++ VKA+     + G CP  QR  + L  K VP+    ++    P    +  P  ++P++ +D     D+  I   +EE         PP+F S+          G+ +F  F  F+K+  P  ++   Q LL  L  LD +L+        G P        F+ G+++T  D SL PKL+ +     HF+Q  +P  L  V  Y
Sbjct:    2 AETKLQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDFLEETL------GPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRY 205          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  121 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVG--------SKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAH 600
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E  P G VPV++      V +S +    ++E YPE  L     +            SK+ P   +F++SK   D     +AL  E K L+E +  +   F+ G+  + VD    P    L+ ALE      + E LAH
Sbjct:   32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKS-FLGGDSPSMVDYLTWPWFQRLE-ALE------LKECLAH 194          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 47/158 (29.75%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  121 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 561
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E  P G VPV++      + +S +    ++E YPE  L   +P E A       + SK+     +F+++K   D  G ++ L +E   L+E +      F  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLE-ALE 188          
BLAST of CK934416 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  121 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEITPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 561
            CPF+QR LL L  K + ++   IN+ +KP+WF +  P G VPV++    + + +S +    ++E YP   L   +P E A       + SK+ P  + F++ ++  D  G ++ L +E   L+E L      +  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLE-ALE 188          
The following BLAST results are available for this feature:
BLAST of CK934416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CLIC5_HUMAN2.241e-1225.23Chloride intracellular channel protein 5 OS=Homo s... [more]
CLIC3_HUMAN4.993e-1226.54Chloride intracellular channel protein 3 OS=Homo s... [more]
GSTO1_MOUSE1.112e-1130.99Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
GSTO1_RAT4.227e-1129.75Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG4.227e-1129.11Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934416 ID=CK934416; Name=CK934416; organism=Citrus sinensis; type=EST; length=642bp
GGGGGTTGTCGGGTTTTCACTAACTGCAACATACACTCTCTCTGATCACT
CAATTCCGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCG
CTCCTGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACT
TTGGAGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGA
CAAGCCTCAATGGTTTTTGGAGATAACCCCAGAAGGGAAAGTACCTGTGG
TAAAGTTTGATGACAAGTGGGTGGCTGACTCTGATGTGATTGTTAGAATT
ATTGAGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGC
CTCTGTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCA
AGGACCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCA
TTGGATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAGAA
GGTCACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGG
TAGCTCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCAC
GTCCATGGGTACNNNAAGAAGCTTTTTGCTCTGGAATCCTTT
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