CK934417

Overview
NameCK934417
Unique NameCK934417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.690e-27
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            IT+SKLRGK               NWLQVGDDLNHRNL+DLAK++ ++LLLRM QRNLVV+SSP+ AKEVLHTQGVEFGSRT+NVV
Sbjct:   21 ITISKLRGKPFKLPPGPFPVPVFGNWLQVGDDLNHRNLTDLAKRFAEILLLRMEQRNLVVISSPELAKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_PETCR (Trans-cinnamate 4-monooxygenase OS=Petroselinum crispum GN=CYP73A10 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            IT+SKLRGK+              NWLQVGDDLN RNL D AKK+GD+ +LRMGQRNLVVVSSP+ AK+VLHTQGVEFGSRT+NVV
Sbjct:   22 ITISKLRGKKLKLPPGPIPVPVFGNWLQVGDDLNQRNLVDYAKKFGDLFMLRMGQRNLVVVSSPELAKDVLHTQGVEFGSRTRNVV 107          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.162e-26
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            +T+SKLRGKR               WLQVGDDLNHRNL+D AK++G++ LLRMGQRNLVVVSSP+ AKEVLHTQ VEFGSRT+NVV
Sbjct:   21 VTISKLRGKRFKLPPGPIPVPIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.817e-26
Identity = 59/84 (70.24%), Postives = 64/84 (76.19%), Query Frame = 3
Query:  114 VSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            +SKLRGK+              NWLQVGDDLNHRNL D AKK+GD+ LLRMGQRNLVVVSSPD  KEVL TQGVEFGSRT+NVV
Sbjct:   23 ISKLRGKKLKLPPGPIPIPIFGNWLQVGDDLNHRNLVDYAKKFGDLFLLRMGQRNLVVVSSPDLTKEVLLTQGVEFGSRTRNVV 106          
The following BLAST results are available for this feature:
BLAST of CK934417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TCMO_PEA5.690e-2768.60Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_PETCR7.431e-2768.60Trans-cinnamate 4-monooxygenase OS=Petroselinum cr... [more]
TCMO_MEDSA2.162e-2667.44Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
TCMO_ARATH4.817e-2670.24Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934417 ID=CK934417; Name=CK934417; organism=Citrus sinensis; type=EST; length=365bp
GGGGCACCCACTTGAGCTTCCCTGTATTCATTACGTTTATCGTAAACATG
GATCTCCTCTTGCTGGAAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGT
TGTCGCCATTACCGTCTCTAAACTCCGCGGAAAGCGCTTCAAGCTTCCCC
CCGGCCCCCTCCCCGTCCCCGTCTTCGGCAACTGGCTCCAGGTCGGCGAT
GACTTGAACCATCGGAACCTCTCCGACTTAGCCAAGAAATATGGAGATGT
CCTCCTCCTCCGCATGGGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGG
ACCACGCCAAGGAGGTCCTGCACACGCAGGGAGTGGAGTTCGGATCACGA
ACGAAGAACGTCGTG
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