CK934457

Overview
NameCK934457
Unique NameCK934457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934457_ssr457 microsatellite CK934457_ssr457:457..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVG 676
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT+ETA EAA AYD AA+R+RGSKA+LNFP  +G
Sbjct:   97 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 160          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVG 676
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT+ETA EAA AYD AA+R+RGSKA+LNFP  +G
Sbjct:  101 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 164          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEV 673
            K YRGVRRRPWG+YAAEIRD  R G+RVWLGTFETA EAA AYD AAFR+RG+KA+LNFP E+
Sbjct:   57 KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEI 119          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVG 676
            +HYRGVRRRPWG++AAEIRDP + G+RVWLGT+ET  EAA AYD AA+R+RGSKA LNFP  +G
Sbjct:  103 RHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIG 166          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 44/64 (68.75%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVG 676
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT+E+A EAA AY  AAFR+RG+KA+LNFP  +G
Sbjct:  105 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG 168          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLE 670
            ++  +RGVRRRPWG++AAEIRDP+R G+R+WLGTFETA EAA+AYD AAF LRG  AILNFP E
Sbjct:   16 KQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEV 673
            EEK YRGVR+RPWG++AAEIRD  RKG RVWLGTF+TA  AA AYD AAF L+GS A+LNFP +V
Sbjct:   78 EEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADV 142          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVG 676
            YRGVRRRPWG++AAEIRDP + G+RVWLGT+ET  +AA AYD AAF+LRGSKA LNFP  +G
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIG 153          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLE 670
            EK YRGVRRRPWG++AAEIRD  R G RVWLGTFE+A EAA AYD AAF +RGS AILNF  E
Sbjct:   79 EKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAE 141          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPL 667
            +E HYRGVR+RPWGRYAAEIRDP +K SRVWLGTF+TA EAAKAYD AA   RG KA  NFPL
Sbjct:   23 KEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPL 84          
The following BLAST results are available for this feature:
BLAST of CK934457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF2_TOBAC1.204e-2271.88Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY1.204e-2271.88Ethylene-responsive transcription factor 2 OS=Nico... [more]
PTI5_SOLLC1.572e-2277.78Pathogenesis-related genes transcriptional activat... [more]
ERF1_TOBAC1.019e-2171.88Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF1_SOLLC2.271e-2168.75Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF98_ARATH2.965e-2171.88Ethylene-responsive transcription factor ERF098 OS... [more]
ERF94_ARATH3.873e-2172.31Ethylene-responsive transcription factor ERF094 OS... [more]
ERF99_ARATH1.922e-2072.58Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF92_ARATH2.510e-2074.60Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF4_NICSY3.279e-2076.19Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934457 ID=CK934457; Name=CK934457; organism=Citrus sinensis; type=EST; length=685bp
GGGGAAAATACACCAAACCAATTTCCATTTACATTTCATCTCATCTTCAA
TACCAACTGTAGCTTTTCTTTTAAATATGGCATCTCTGAATGAAGCATCA
ACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTTACTTC
TTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCTCAAA
GCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAACAGTT
ACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTTCAAG
CACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATACCCC
AAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGATGCT
GATAACCCAGTTGCTGTGAAAAATAAAGATCCAGATGCTGCTGCTGATAA
TAATACTAATAATAATAATAAAAATAATGAGGAAAAGCATTACAGAGGAG
TAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCCGAAT
AGAAAAGGGAGCCGGGTTTGGCTTGGGACTTTTGAAACTGCCGTGGAAGC
CGCCAAAGCTTATGACAACGCTGCGTTTAGGCTGCGTGGAAGCAAAGCGA
TATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTG
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